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"Klebsiella pneumoniae is considered intrinsically resistant to ampicillin because of the chromosomal blaSHV β-lactamase. However, amoxicillin-susceptible isolates have been sporadically reported. This retrospective observational study analyzes amoxicillin-susceptible K. pneumoniae isolates collected between 2016 and 2023 at a university hospital in France. Whole-genome sequencing, phylogenetic analysis, and virulence and resistance profiling were performed, and clinical data were reviewed. The study aims to characterize the genomic mechanisms underlying amoxicillin susceptibility and to assess associations with specific lineages, particularly hypervirulent clonal complex 66 (CC66), and clinical features."
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| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Bacterial species identification by Whole Genome sequencing | Biological |
| Measure | Description | Time Frame |
|---|---|---|
| Assessment of blaSHV gene status (presence, deletion, or disruptive mutations) by whole-genome sequencing and its association with amoxicillin susceptibility. | Whole-genome sequencing was used to determine blaSHV gene status (presence, absence, or disruptive mutations) | At isolate collection and genomic analysis (2016-2023) |
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Inclusion Criteria:
Exclusion Criteria:
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Patients with Klebsiella pneumoniae infection treated at a university hospital in France between 2016 and 2023.
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| CHU de NICE | Nice | Alpes Maritimes | 06000 | France |
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| ID | Term |
|---|---|
| D018805 | Sepsis |
| D007239 | Infections |
| ID | Term |
|---|---|
| D018746 | Systemic Inflammatory Response Syndrome |
| D007249 | Inflammation |
| D010335 | Pathologic Processes |
| D013568 | Pathological Conditions, Signs and Symptoms |
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Only the bacteial strains (isolated from patients blood culture samples were retained. Only bacterial DNA was extractable from these samples and not patient DNA.