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The role of the pulmonary microbiome in the pathophysiology of lung disease is becoming increasingly well understood. Studies on murine models have highlighted the immunomodulatory and antibacterial activity of certain commensal bacteria, such as S. mitis, and have led to an understanding of their potential therapeutic impact. The investigators will therefore couple their analyses of the respiratory microbiome with an in-depth analysis of mucosal immunity. In particular, they will characterize immune cell types and frequencies using high-dimensional (spectral) flow cytometry and single cell RNA-sequencing. Finally, they will study the mediators exchanged between the microbiome and the host using proteomic and metabolomic analyses of respiratory fluids.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Voluntary | Other | Subjects undergoing scheduled surgery in the operating room at Nantes University Hospital, requiring general anesthesia with placement of an endotracheal intubation tube for invasive mechanical ventilation. |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Voluntary | Other | Subjects undergoing scheduled surgery in the operating room at Nantes University Hospital, requiring general anesthesia with placement of an endotracheal intubation tube for invasive mechanical ventilation. |
| Measure | Description | Time Frame |
|---|---|---|
| Atlas of host-microbiome interactions | Healthy respiratory metacluster | 1 day |
| Measure | Description | Time Frame |
|---|---|---|
| Correlations between bacterial species | To define the link between the patient and the bacterial transcriptional activities | Day 1 |
| Correlations between bacterial species | To define the link between the patient and the bacterial composition |
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| CHU de Nantes | Nantes | France |
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| Day 1 |
| Correlations between cell populations | To define the link between the patient and the transcriptional clusters of cell populations | Day 1 |
| Correlations between metabolite concentrations | To define the link between the patient and the metabolite concentrations | Day 1 |
| Correlations between protein concentrations | To define the link between the patient and the protein concentrations | Day 1 |
| Correlations between host-microbiome interactions and quality of life scales | To define the link between the patient and different scales (MOCA, EPICES, modified MRC, NYHA, EQ5D-5L, SWLS, SF-36, HADS and BPI | Day 1 |