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| ID | Type | Description | Link |
|---|---|---|---|
| 2023-A02206-39 | Other Identifier | ID RCB |
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Oceania's populations, including Melanesians, are paying a heavy price for dengue fever, which has been circulating actively in the region since the Second World War. In New Caledonia (NC), the incidence of dengue fever is higher among municipalities predominantly populated by Melanesians, suggesting that Melanesians may have an increased susceptibility to symptomatic dengue fever. Differences in antiviral immune responses between populations of different geographical origins are partly the result of population-specific immune regulatory variants. In turn, viruses have imposed considerable selective pressure on human populations. Although crucial to understanding their susceptibility to viral infections, the genetic determinants of the antiviral immune response of Oceanians remain to be characterized.
In this context, the hypothesis is that the genetic origin of Oceanians, and Melanesians in particular, has shaped their antiviral immune response and contributes to their greater susceptibility to certain viral infections. The aim is to characterize the immune response to pathogens affecting the New Caledonian population, and in particular to dengue virus, of Melanesian and European populations, and to identify its genetic determinants. It will be explored whether saliva can be used as a non-invasive sample to study the seroprevalence of dengue in Oceanian populations.
Cross-sectional observational study with prospective sample and data collection Individuals will be identified from among eligible participants in the STEP-BSA21 and COVCAL studies.
Information and consent Questionnaire, saliva collection on Oragene tube, buccal swabbing and 20 mL blood collection on CPT tube
DNA extraction and low-coverage sequencing of participants' complete genomes And Isolation and in vitro stimulation of peripheral blood mononuclear cells (PBMCs) with dengue virus
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Non-febrile adults of Melanesian and European origin | Other | Saliva samples and 20 mL blood samples from individuals of Melanesian and European origin from NC |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Blood collection | Other | 20 ml-blood sample |
| |
| Measure | Description | Time Frame |
|---|---|---|
| Identify the genetic determinants of the innate immune response to pathogens affecting the New Caledonian population, and in particular to the dengue virus in individuals of Melanesian and European origin. | Identification by genomic techniques of expression Quantitative Trait Loci (eQTL) specifically associated with the innate immune response of Peripheral Blood Mononuclear Cells (PBMCs) collected from individuals of Melanesian and European origin and stimulated in vitro by DENV. | 3 years |
| Measure | Description | Time Frame |
|---|---|---|
| To describe the genetic diversity of Melanesian and European populations in NC in relation to the determinants of susceptibility to health problems affecting NC populations. | Low-coverage DNA sequencing of the complete genome of individuals of Melanesian and European origin. | 3 years |
| Characterizing the transcriptomic response to DENV in individuals of Melanesian and European origin. |
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Inclusion Criteria:
Exclusion Criteria:
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| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Catherine Inizan, PhD | Contact | +687 27 26 66 | cinizan@pasteur.nc | |
| Myrielle Dupont-Rouzeyrol, PhD | Contact | +687 27 75 30 | mdupont@pasteur.nc |
| Name | Affiliation | Role |
|---|---|---|
| Marc Jouan, MD | Institut Pasteur de Nouvelle-Calédonie | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Institut Pasteur de Nouvelle-Calédonie | Noumea | 98 835 | New Caledonia |
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| ID | Term |
|---|---|
| D014777 | Virus Diseases |
| D003715 | Dengue |
| ID | Term |
|---|---|
| D007239 | Infections |
| D000096724 | Mosquito-Borne Diseases |
| D000079426 | Vector Borne Diseases |
| D001102 | Arbovirus Infections |
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| ID | Term |
|---|---|
| D001800 | Blood Specimen Collection |
| ID | Term |
|---|---|
| D013048 | Specimen Handling |
| D019411 | Clinical Laboratory Techniques |
| D019937 | Diagnostic Techniques and Procedures |
| D003933 | Diagnosis |
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| saliva collection |
| Other |
saliva sample |
|
Quantification by single cell RNAseq techniques of differentially expressed transcripts in response to in vitro dengue virus stimulation by Peripheral Blood Mononuclear Cells (PBMCs) collected from individuals of Melanesian and European origin. |
| 3 years |
| Characterize the cytokine and chemokine response to DENV in individuals of Melanesian and European origin. | Quantification by multiplex techniques of the concentration of cytokines and chemokines differentially secreted in response to in vitro stimulation by dengue virus by Peripheral Blood Mononuclear Cells (PBMCs) collected from individuals of Melanesian and European origin. | 3 years |
| Study the effect of environmental factors (smoking/non-smoking status, history of Cytomegalovirus or dengue virus infection, presence of diabetes, etc.) on the immune response to dengue virus. | Multivariate analyses of the association of environmental factors collected during the inclusion visit (questionnaire and measurements) or during analyses conducted as part of the present research with the immune response targeting the dengue virus. | 3 years |
| Study the oral microbiome of individuals of Melanesian and European origin and analyze its association with the immune response to pathogens. | Next-generation sequencing and analysis of the oral microbiome on a saliva sample | 3 years |
| Determine whether history of dengue virus infection can be demonstrated by testing saliva for antibodies using the Luminex technique. | Luminex quantification of dengue virus antibodies in serum and saliva from Melanesian and European individuals. | 3 years |
| D018177 |
| Flavivirus Infections |
| D018178 | Flaviviridae Infections |
| D012327 | RNA Virus Infections |
| D006482 | Hemorrhagic Fevers, Viral |
| D011677 | Punctures |
| D013514 | Surgical Procedures, Operative |
| D008919 | Investigative Techniques |