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| ID | Type | Description | Link |
|---|---|---|---|
| R01CA238433 | U.S. NIH Grant/Contract | View source |
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| Name | Class |
|---|---|
| University of Michigan | OTHER |
| National Cancer Institute (NCI) | NIH |
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This is a longitudinal cohort study to assess the impact of repeated sampling of an oral microbiome signature for Barrett's esophagus (BE). Potential participants will be identified through chart review of patients who have had an endoscopy in the past three years.
Saliva collection is non-invasive and can be performed in clinical and non-clinical settings. As such, saliva testing is a highly attractive method for diagnosing and/or monitoring disease. The investigators previously showed that the bacterial make-up ("microbiome") of saliva is highly distinct in patients with and without Barrett's esophagus (BE), a precursor to esophageal cancer that normally can only be diagnosed by undergoing an upper endoscopy. While the microbiome of saliva is felt to be relatively stable over time, it is unclear whether a microbiome signature for Barrett's esophagus is reproducible within individuals. Also, repeated testing of saliva may improve the ability to diagnose Barrett's esophagus.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Control | Patients who have undergone an endoscopy within the last three years and have never been diagnosed with Barrett's esophagus. |
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| Barrett's Esophagus | Patients who have undergone an endoscopy within the last three years and have histologically confirmed Barrett's esophagus. BE segment must be M>1cm, and has not be treated with endoscopic eradication therapy (focal mucosal resection without subsequent eradication therapy is allowed). |
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| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Sample collection | Other | Collection of saliva sample |
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| Measure | Description | Time Frame |
|---|---|---|
| Performance characteristics of a microbiome-based classifier with repeated sampling | Using a classifier developed from 16S rRNA gene sequencing data, the investigators will calculate the area under the receiver operating curve (AUROC) and associated 95% confidence interval for a classifier with three repeated measures per subject. | 2 months |
| Intra-class correlation coefficients (ICC) by BE status | This will be measured to determine the degree of consistency of a microbiome-based classifier for each individual's salivary microbiome assessments (three total per subject). | 2 months |
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Inclusion Criteria:
Exclusion Criteria:
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Enrollment will continue until a total of 250 subjects complete all three saliva specimen collections:
The investigators anticipate that approximately 10% of subjects will not complete all three specimen collections and will be excluded from the primary outcome analyses. Thus, the investigators expect to enroll ~275 subjects to have 250 with three saliva specimen collections. There is no cap on enrollment per study site. The anticipated duration of enrollment is 2 years (24 months).
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Julian Abrams, MD | Contact | 212-305-1909 | ja660@cumc.columbia.edu | |
| Katharine Boyce, RN | Contact | kb3217@cumc.columbia.edu |
| Name | Affiliation | Role |
|---|---|---|
| Julian Abrams, MD | Columbia University | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| University of Michigan | Recruiting | Ann Arbor | Michigan | 48109 | United States |
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| ID | Term |
|---|---|
| D001471 | Barrett Esophagus |
| ID | Term |
|---|---|
| D011230 | Precancerous Conditions |
| D009369 | Neoplasms |
| D004935 | Esophageal Diseases |
| D005767 | Gastrointestinal Diseases |
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| ID | Term |
|---|---|
| D013048 | Specimen Handling |
| ID | Term |
|---|---|
| D019411 | Clinical Laboratory Techniques |
| D019937 | Diagnostic Techniques and Procedures |
| D003933 | Diagnosis |
| D008919 | Investigative Techniques |
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Saliva
| Columbia University Irving Medical Center | Recruiting | New York | New York | 10032 | United States |
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| D004066 |
| Digestive System Diseases |