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| Name | Class |
|---|---|
| Sunstar, Inc. | INDUSTRY |
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Pilot case series with a split-mouth design to track subjects with known exposure (dental biofilm accumulation) over 21 days. Descriptive design, using single cell RNA sequencing as a "digital biopsy" to catalog and contrast inflamed versus non-inflamed tissues from within the same mouth and across patients. Specimens (human) will biobanked from the 'digital biopsy' site for future analysis, including: Gingival crevicular fluid, oral epithelial stem/progenitor cells, and plaque samples, for 'omics analyses including metabolomics, microbiomic, and genomic data.
Purpose is to conduct the first study of human gingiva in health and after biofilm-induced inflammation in the gingiva using scRNAseq. The pilot will involve induction of experimental gingivitis in all participants.
Participants include recruitment of 6 participants. Following consenting, screening, and enrollment, a customized acrylic stent will be used only on the selected sextant/teeth specified in the protocol, and only during tooth brushing to prevent oral hygiene in selected sextant/teeth. After the completion of the 3-week gingivitis induction phase, participants will enter a 2 week resolution phase. In the resolution phase, participants will reinstate full mouth oral hygiene, with the exception of flossing. Oral prophylaxis will be performed to regain health. During the 3 week gingivitis induction phase, participants will be required to return to the clinic every 7 days for safety checks.
Study Procedures (methods): Medical history, demographics (height/weight), urine based pregnancy test, vital signs (to include blood pressures, and pulse), standard dental clinical measures (to include plaque index, gingival index, bleeding on probing, and clinical attachment level), alginate impressions taken for fabrication of an acrylic stent (mouth guard), 2 gingival biopsies, 4 subgingival (below the gum line) plaque samples, 4 Gingival Crevicular Fluid (naturally occurring fluid between the gum and teeth) samples, and adult prophylaxis
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Healthy Volunteers | Experimental | Enrolled subjects will be included in an experimental gingivitis model (SIBO) for 21 days and use an acrylic stent fabricated before and dispensed at the baseline appointment |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Stent-Induced Biofilm Overgrowth | Procedure | Customized acrylic dental (sextant) stent will be used during brushing for 21 days to influence reversible gingival tissue inflammation. |
| Measure | Description | Time Frame |
|---|---|---|
| Percent Composition of Human Gingival Tissue at Day 1 | Percentage of the human gingival biopsies that are epithelial, immune, or mesenchymal cells in health. | Day 1 |
| Percent Composition of Human Gingival Tissue at Day 21 | Percentage of the human gingival biopsies that are epithelial, immune, or mesenchymal cells during inflammation. | Day 21 |
| Percent Composition of Human Gingival Epithelial Cells at Day 1 | Percentage of the human gingival epithelial cell subtypes that are present (i.e. keratinocytes, Langerhans cells, etc.) in health. | Day 1 |
| Percent Composition of Human Gingival Epithelial Cells at Day 21 | Percentage of the human gingival epithelial cell subtypes that are present (i.e. keratinocytes, Langerhans cells, etc.) during inflammation. | Day 21 |
| Percent Composition of Human Gingival Immune Cells at Day 1 | Percentage of the human immune cell subtypes that are present (i.e. CD4, CD8, etc.) in health. | Day 1 |
| Percent Composition of Human Gingival Immune Cells at Day 21 | Percentage of the human immune cell subtypes that are present (i.e. CD4, CD8, etc.) during inflammation. | Day 21 |
| Percent Composition of Human Gingival Mesenchymal Cells at Day 1 | Percentage of the human mesenchymal cell subtypes that are present (i.e. stromal endothelial, etc.) in health. |
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Inclusion Criteria:
Exclusion Criteria
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| Name | Affiliation | Role |
|---|---|---|
| Kevin M Byrd, DDS, PhD | Adams School of Dentistry, UNC Chapel Hill | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Adams School of Dentistry | Chapel Hill | North Carolina | 27599 | United States |
Single-cell RNA sequencing data will be shared through the Gene Expression Omnibus (GEO), a public functional genomics data repository supporting MIAME-compliant data submissions, which accepts sequence-based data. Gene list data will be searchable, cell by cell, through an online database. The files will be deposited both as raw reads (.fastq) and differential gene expression (.txt and .xlsx). Once data have been cleaned, assessed for differential gene expression, and validated by FISH/IHC, data will be made public. This will allow us to make this data freely available for others to investigate and reanalyze for their own purposes to accelerate further discoveries.
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Gene expression data will be available for download once the manuscript has been accepted for publication.
Gene expression lists by cell types will be provided to download freely in association with available journal access.
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| ID | Term |
|---|---|
| D005891 | Gingivitis |
| ID | Term |
|---|---|
| D007239 | Infections |
| D005882 | Gingival Diseases |
| D010510 | Periodontal Diseases |
| D009059 | Mouth Diseases |
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|
| Day 1 |
| Percent Composition of Human Gingival Mesenchymal Cells at Day 21 | Percentage of the human mesenchymal cell subtypes that are present (i.e. stromal endothelial, etc.) in health. | Day 21 |
| Genes Expressed In Epithelial Cells at Day 1 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in epithelial cells in health will be produced. | Day 1 |
| Genes Expressed In Epithelial Cells at Day 21 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in epithelial cells during inflammation will be produced. | Day 21 |
| Genes Expressed In Immune Cells at Day 1 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in immune cells in health will be produced. | Day 1 |
| Genes Expressed In Immune Cells at Day 21 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in immune cells during inflammation will be produced. | Day 21 |
| Genes Expressed In Mesenchymal Cells at Day 1 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in mesenchymal cells in health will be produced. | Day 1 |
| Genes Expressed In Mesenchymal Cells at Day 21 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in mesenchymal cells during inflammation will be produced. | Day 21 |
| Genes Expressed In Epithelial Cell Subtypes at Day 1 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in epithelial cell subtypes in health will be produced. | Day 1 |
| Genes Expressed In Epithelial Cell Subtypes at Day 21 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in epithelial cell subtypes during inflammation will be produced. | Day 21 |
| Genes Expressed In Immune Cell Subtypes at Day 1 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in immune cell subtypes in health will be produced. | Day 1 |
| Genes Expressed In Immune Cell Subtypes at Day 21 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in immune cell subtypes during inflammation will be produced. | Day 21 |
| Genes Expressed In Mesenchymal Cell Subtypes at Day 1 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in mesenchymal cell subtypes in health will be produced. | Day 1 |
| Genes Expressed In Mesenchymal Cell Subtypes at Day 21 | Gene expression will be ranked by highest to lowest and a list of the top 100 genes in mesenchymal cell subtypes during inflammation will be produced. | Day 21 |
| D009057 |
| Stomatognathic Diseases |