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The goal of this study is to optimise the pre-analytical process for metagenomic analysis of the microbiota in comparison with the current reference technique.
A comparative evaluation will be performed between the following and the reference standard (quickly frozen fresh stool):
i) faecal sample collection devices commonly used in France and abroad for metagenomics, metabolomics and culturomics; ii) self-collection device that would allows the collection of faecal material and the generation of aliquots for all possible omic assessments for research purposes, including metagenomic analysis, as well as culturomics and faecal transfer to animal models.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Stool Sampling Arm | Experimental |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Stool sampling | Other | Participants will have to collect a stool sample and submit it within one hour of its emission |
|
| Measure | Description | Time Frame |
|---|---|---|
| Fecal microbial composition (alpha diversity and beta diversity) obtained by shotgun metagenomic sequencing. | Through study completion, an average of 4 months |
| Measure | Description | Time Frame |
|---|---|---|
| Fecal microbial composition obtained by shotgun metagenomic sequencing | Through study completion, an average of 4 months | |
| Fecal metabolic composition obtained by mass spectrometry | Through study completion, an average of 4 months |
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Inclusion Criteria:
Exclusion Criteria:
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| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Audrey GABELLE, Pr | Contact | +33 4 67 33 60 29 | a-gabelle@chu-montpellier.fr |
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| CHU de Montpellier | Montpellier | France | 34295 | France |
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