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| Name | Class |
|---|---|
| University of Milan | OTHER |
| Università degli Studi del Piemonte Orientale Amedeo Avogadro | OTHER |
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Meningiomas are the most common primary intracranial tumors. Current treatment relies on surgical resection and radiotherapy, but molecular predictors for recurrence are lacking. This study aims to investigate epigenetic features, specifically histone post-translational modifications (PTMs) and DNA methylation, to stratify patients. The study involves a retrospective cohort to define an epigenetic signature and a prospective cohort to validate it in tissues and liquid biopsies (plasma/EVs).
The study is shaped by two phases. The first is a histone PTMs analysis in solid tissues from a retrospective cohort of 150 meningioma FFPE samples. The second step consists of validating the epigenetic signature in a prospective cohort of patients (n=60). The study addresses four main objectives: 1) Dissecting the informative power of epigenetic signatures (histone PTMs by MS) in tissues; 2) Validating signatures in prospective tissues and matched sera (circulating nucleosomes); 3) Assessing DNA methylation profiles from plasma-derived Extracellular Vesicles (EVs); 4) Developing a Machine Learning model integrating epi-proteomics, DNA-methylation, and clinical data for prognostic subtyping.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Retrospective Cohort | 150 patients operated for non-recurrent meningioma between 2008 and 2016. | ||
| Prospective Cohort | 60 patients diagnosed with meningioma recruited prospectively. |
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| Measure | Description | Time Frame |
|---|---|---|
| Definition of a novel epigenetic signature based on MS-profiling | Identification of histone post-translational modifications (PTMs) patterns in FFPE tissue samples capable of classifying tumor recurrence. | Months 1-12 |
| Measure | Description | Time Frame |
|---|---|---|
| Validation of epigenetic signature in prospective tissues | Validation of the histone PTMs signature using Mass Spectrometry on FFPE samples from the prospective cohort. | Months 13-18 |
| Validation of epigenetic biomarkers in circulating nucleosomes |
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Inclusion Criteria:
Inclusion Criteria (Retrospective & Prospective):
(Retrospective only):
Exclusion Criteria:
(Prospective only):
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Patients with Meningioma
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Fondazione IRCCS Istituto Neurologico Carlo Besta | Recruiting | Milan | Italy |
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| ID | Term |
|---|---|
| D008579 | Meningioma |
| ID | Term |
|---|---|
| D009380 | Neoplasms, Nerve Tissue |
| D009370 | Neoplasms by Histologic Type |
| D009369 | Neoplasms |
| D009383 | Neoplasms, Vascular Tissue |
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Tessuti FFPE, siero, plasma, EVs
Profiling histone PTMs in circulating nucleosomes from patient sera matching the tissues profiled.
| Months 13-20 |
| DNA methylation profiling in plasma-EVs | Assessment of genome-wide DNA methylation profile from DNA extracted from plasma-derived Extracellular Vesicles. | Months 10-20 |
| Development of a Machine Learning prognostic classifier | Integration of epi-proteomics data, DNA-methylation profiles, and clinico-pathological information to predict recurrence. | Months 18-24 |
| D008577 | Meningeal Neoplasms |
| D016543 | Central Nervous System Neoplasms |
| D009423 | Nervous System Neoplasms |
| D009371 | Neoplasms by Site |
| D009422 | Nervous System Diseases |