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This trial aims to elucidate the immune landscape and genetic basis of BRAF-mutant colorectal cancer (CRC) in Chinese patients by analyzing tumor tissue and peripheral blood. Single-cell RNA sequencing, T cell receptor (TCR) sequencing, proteomics and metabolomics, will be performed on tumor tissues, alongside TCR sequencing of peripheral blood, to establish a comprehensive immune and genetic profile of BRAF-mutant CRC. The study seeks to identify novel immune biomarkers, therapeutic targets, and signaling pathways, and to enable molecular subtyping for precision treatment and personalized management of BRAF-mutant CRC patients.
As an oncogenic gene, BRAF V600E subverts the need for continuous upstream activation and overcomes negative feedback signals that terminate pathway activation. In colorectal cancer, BRAF V600E mutations are associated with older age, right colon primary tumors and female gender, as well as reduced chemotherapy sensitivity and poor prognosis. In addition to a poor prognosis, BRAF V600E-mutant colorectal cancer is associated with a higher incidence of peritoneal metastasis, resulting in tumor-related symptoms such as pain, ascites, gastrointestinal and urinary obstruction, which severely compromise patients' quality of life. Although there is a trend that BRAF V600E mutant patients who receive high-intensity chemotherapy have longer progression-free survival (PFS), the prognosis of the BRAF V600E mutant population remains dismal and approximately 40% of patients do not respond to first-line high-intensity chemotherapy. In addition, the response rate of combined targeted therapy is limited to around 25% and the duration of anti-epidermal growth factor receptor (EGFR) and anti-BRAF is around 4 months due to the presence of bypass activation. What's more, patients with BRAF V600E mutation and mismatch repair-proficient (pMMR) also had a poor response to anti-programmed death-1 (PD-1) therapy. The tumor heterogeneity and tumour immune microenvironment of BRAF V600E mutant colorectal cancer need to be investigated. The study seeks to identify novel immune biomarkers, therapeutic targets, and signaling pathways, and to enable molecular subtyping for precision treatment and personalized management of BRAF-mutant CRC patients.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| BRAF V600E mutant colorectal cancer cohort | Single-cell RNA sequencing, TCR sequencing, proteomics and metabolomics of 200 prospectively collected tissue samples. TCR sequencing of 200 prospectively collected blood samples. |
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| Measure | Description | Time Frame |
|---|---|---|
| prediction accuracy of treatment response | We will use gene data and treatment response data of the patients to construct a prediction model, the accuracy of model to anticipating partial response of patients is the primary. | through study completion, an average of 3 years |
| Measure | Description | Time Frame |
|---|---|---|
| prediction of accuracy of survival rate | We will use the gene data and follow-up data of the patients to construct a prediction model, the accuracy of model to anticipating the 3-year survival rate of patients is the secondary endpoint. | through study completion, an average of 3 years |
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Inclusion Criteria:
Exclusion Criteria:
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Patients must meet all inclusion and exclusion criteria. In addition, the patient should be thoroughly informed about the study, including the study visit schedule and required evaluations and all regulatory requirements for informed consent. The written informed consent should be obtained from the patient prior toenrollment. The following criteria apply to all patients enrolled onto the study unless otherwise specified.
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Yanhong Deng, M.D. | Contact | 86-13925106525 | dengyanh@mail.sysu.edu.cn |
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The fresh tumor tissues/biopsies and peripheral blood samples of each patient will be collected.