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Background. Bacillus cereus group (Bc) comprises twenty-six closely related species of spore-forming environmental bacteria. Recently, increased sepsis and septic shock caused by Bc were reported in preterm neonates (PN), and the mortality rate can reach up to 30%. Using Whole Genome Sequencing (WGS) increasingly used to characterize Bc strains, The team aimed to determine an accurate identification to the species level of the strains involved in Bc invasive infections in preterm neonates in France and study their virulome profile.Methods. The team performed WGS for 40 neonate clinical strains responsible for invasive infections in PN. A screening of virulence genes was performed to characterize strains associated with poor prognosis. Clinical data were collected and all clinical and genomic findings were analyzed for risk factors for death.
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| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Premature neonates with invasive infection caused by Bacillus cereus | Biological | The whole genome sequencing of the bacterial strains was performed by using both Illumina and Nanopore technologies, allowing us to obatin high quality and complete circular genomes. |
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| Measure | Description | Time Frame |
|---|---|---|
| Mortality | The mortality at D28 after birth was collected in patients record. | 28 days after birth |
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Inclusion Criteria:
Exclusion Criteria:
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The premature newborn included in the study were recruited from 14 NICU in 14 Tertiary Care center in France. This study is a national retrospective study
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Raymond Ruimy | Contact | 04.92.03.62.20 | + 33 | ruimy.r@chu-nice.fr |
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| CHU NICE | Recruiting | Nice | Alpes Maritimes | 06000 | France |
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Only the bacteial strains (isolated from patients blood culture samples were retained. Only bacterial DNA was extractable from these samples and not patient DNA.
| CHU lille | Recruiting | Lille | France |
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| AP-HM Marseille | Recruiting | Marseille | France |
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| CHU Nantes | Recruiting | Nantes | France |
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| CHU Nîmes | Recruiting | Nîmes | France |
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| AP-HP Hôpital Robert Debré | Recruiting | Paris | France |
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| Hôpital Antoine Béclère, AP-HP | Recruiting | Paris | France |
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| Hôpital Cochin | Recruiting | Paris | France |
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| CHU de Poitiers | Recruiting | Poitiers | France |
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| CHU Rennes | Recruiting | Rennes | France |
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| CHRU de Strasbourg | Recruiting | Strasbourg | France |
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| CHU Toulouse | Recruiting | Toulouse | France |
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| CHU de Tours | Recruiting | Tours | France |
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| ID | Term |
|---|---|
| D018805 | Sepsis |
| D007239 | Infections |
| ID | Term |
|---|---|
| D018746 | Systemic Inflammatory Response Syndrome |
| D007249 | Inflammation |
| D010335 | Pathologic Processes |
| D013568 | Pathological Conditions, Signs and Symptoms |
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