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This study aims to assess the diagnostic performance of different tests, including metagenomic next-generation sequencing (mNGS), real-time PCR, galactomannan assay, and lateral-flow device tests, in detecting invasive fungal disease in lung transplant recipients using bronchoalveolar lavage fluid samples. The study is retrospective and cross-sectional in design.
This retrospective, cross-sectional study evaluates the diagnostic accuracy of various tests in detecting invasive fungal disease (IFD) in lung transplant recipients. The diagnostic methods under assessment include metagenomic next-generation sequencing (mNGS), real-time polymerase chain reaction (PCR), galactomannan (GM) assay, and lateral-flow device (LFD) testing, all performed on bronchoalveolar lavage fluid (BALF) samples. The study analyzes the sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of each method for diagnosing invasive pulmonary aspergillosis (IPA) and Pneumocystis jirovecii pneumonia (PJP). The sample cohort consists of 109 lung transplant recipients, with data collected from January 2015 to April 2023
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| Measure | Description | Time Frame |
|---|---|---|
| Diagnostic Accuracy of mNGS for Invasive Pulmonary Aspergillosis and Pneumocystis jirovecii Pneumonia | Sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of metagenomic next-generation sequencing (mNGS) in diagnosing invasive pulmonary aspergillosis (IPA) and Pneumocystis jirovecii pneumonia (PJP) using bronchoalveolar lavage fluid (BALF) samples. | From January 2015 to April 2023 |
| Measure | Description | Time Frame |
|---|---|---|
| Comparison of Diagnostic Accuracy between mNGS and Other Methods | Comparative analysis of diagnostic accuracy, including sensitivity and specificity, between mNGS, real-time PCR, Galactomannan (GM) assay, and lateral-flow device (LFD) tests for detecting IPA and PJP in lung transplant recipients. | From January 2015 to April 2023. |
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Inclusion Criteria:
Exclusion Criteria:
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Patients who underwent lung transplantation and were suspected of having invasive fungal infections (IPA or PJP) based on clinical symptoms, radiological findings, or microbiological results. The study includes adults aged 18 and above who were treated at a tertiary hospital from January 2015 to April 2023.
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| ID | Term |
|---|---|
| D000072742 | Invasive Fungal Infections |
| D055744 | Invasive Pulmonary Aspergillosis |
| D011020 | Pneumonia, Pneumocystis |
| D009181 | Mycoses |
| ID | Term |
|---|---|
| D001423 | Bacterial Infections and Mycoses |
| D007239 | Infections |
| D055732 | Pulmonary Aspergillosis |
| D001228 | Aspergillosis |
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The biospecimens used in this study were bronchoalveolar lavage fluid (BALF) samples, collected from lung transplant recipients. These samples were used for diagnostic testing, including metagenomic next-generation sequencing (mNGS), real-time PCR, galactomannan (GM) assay, and lateral-flow device (LFD) tests, to evaluate invasive fungal disease. No DNA retention for future use is applicable.
| D008172 |
| Lung Diseases, Fungal |
| D008171 | Lung Diseases |
| D012140 | Respiratory Tract Diseases |
| D016720 | Pneumocystis Infections |
| D012141 | Respiratory Tract Infections |
| D011014 | Pneumonia |