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| Name | Class |
|---|---|
| Singapore General Hospital | OTHER |
| Nanyang Technological University | OTHER |
| Duke-NUS Graduate Medical School | OTHER |
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This is a cohort study to understand the role of the human metagenome, and associated metabolites, in health and in various diseased states, in particular obesity as well as sarcopenia.
Recruited participants will have their fecal, salivary, urine, serum, and in certain instances, mucosal samples taken, for metagenomic sequencing and metabolite testing.
We hope to uncover various differences and signatures in the metagenome and metabolome in various diseased states, with potential future therapeutic applications in personalised medicine.
The human metagenome comprises all nucleotide sequences isolated from all organisms living on and within an individual and has been shown to have significant alterations in relation to certain diseased states related to chronic inflammation, such as obesity and sarcopenia.
The gut bacteriome, and more recently the virome, has been shown to be significantly correlated with the obese phenotype, while gut microbiome dysbiosis is known to occur in individuals with sarcopenia. Clinically, there is an unmet clinical need to better personalize the treatment of patients with metabolic disorders such as obesity and metabolic syndrome, and patients suffering from sarcopenia and frailty as a result of aging. However, the literature regarding the metagenomic signatures associated with these disorders, in particular the non-bacteriome species, bacterial metabolites, and their relationship with host metabolism, were scarce.
Thus we hypothesize, that the human metagenome and metabolome, may play a role in influencing chronic inflammatory disorders related to metabolic disorders, such as obesity and diseases related to aging like sarcopenia and aging.
This is a cohort study, involving metagenomic sequencing and metabolomic analysis, of patients metagenome and metabolome, in various diseased states. A cohort of healthy control patients without obesity or sarcopenia will also be recruited.
Samples collected will include fecal, salivary, serum, urine, mucosal samples for metagenomic sequencing and metabolomic testing.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Obese | Patients with BMI > 27.5 kg/m2 |
| |
| Sarcopenic | Patients who are sarcopenic, defined by the Asian Working Group on Sarcopenia 2014 criteria, which is defined as
|
| |
| Controls | Healthy volunteers who are not obese (BMI <27.5kg/m2), OR who are screened and found to not be sarcopenic |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| No specific intervention | Other | Patient will undergo their routine clinical treatment for their related clinical condition (eg. anti-obesity or bariatric intervention for obese group; muscle strengthening interventions or necessary treatment for their concomitant medical condition for the sarcopenia group). Follow-up testing will include repeat assessment of the subjects metagenome and metabolome over time, and after intervention Control subjects will have no interventions performed as well. |
| Measure | Description | Time Frame |
|---|---|---|
| Metagenomic alterations | Metagenomic alterations in the DNA/ RNA sequences of the saliva, stool (+/- mucosal) metagenome over time | Period of 1 year |
| Metabolomic alterations | Changes in serum and urinary charged metabolites and small molecules over time | Period of 1 year |
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Inclusion Criteria (obese cohort):
Inclusion Criteria (sarcopenic cohort):
Inclusion Criteria (control cohort):
- Healthy subjects without sarcopenia, and not obese (BMI<27.5kg/m2)
Exclusion Criteria:
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Obese and sarcopenic patients will be recruited from patients from Sengkang General Hospital, opportunistically found during their management to be sarcopenic. Obese patients will be recruited from patients who are seen in the Sengkang General Hospital Weight Management Clinic.
Controls are recruited from patients who are on follow-up for other non-related conditions found opportunistically to fit the inclusion criteria, as well as healthy volunteers.
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Koy Min Chue | Contact | 69305000 | chue.koy.min@singhealth.com.sg |
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Sengkang General Hospital | Recruiting | Singapore | 544886 | Singapore |
Undecided at the moment. Deidentified data can potentially be shared following institutional review board and hospital permission.
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| ID | Term |
|---|---|
| D009765 | Obesity |
| D055948 | Sarcopenia |
| D024821 | Metabolic Syndrome |
| ID | Term |
|---|---|
| D050177 | Overweight |
| D044343 | Overnutrition |
| D009748 | Nutrition Disorders |
| D009750 | Nutritional and Metabolic Diseases |
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Fecal specimens; Salivary specimens; Mucosal specimens (these are samples with DNA, for aid in metagenomic sequencing to identify various microbial elements)
Serum specimens; Urinary specimens (these are samples without DNA, for metabolite testing)
|
| D001835 |
| Body Weight |
| D012816 | Signs and Symptoms |
| D013568 | Pathological Conditions, Signs and Symptoms |
| D009133 | Muscular Atrophy |
| D020879 | Neuromuscular Manifestations |
| D009461 | Neurologic Manifestations |
| D009422 | Nervous System Diseases |
| D001284 | Atrophy |
| D020763 | Pathological Conditions, Anatomical |
| D007333 | Insulin Resistance |
| D006946 | Hyperinsulinism |
| D044882 | Glucose Metabolism Disorders |
| D008659 | Metabolic Diseases |