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We will sample intestinal microbiota using a microbiome sampling capsule in patients with Small Intestinal Bacterial Overgrowth (SIBO)
Prospective, open-label, single-arm, non-randomized, multi-center study designed to evaluate the effect of the antibiotic rifaximin on the regional composition of the gut microbiota and metabolic profiles of subjects diagnosed with SIBO, using the CapScan collection capsule.
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| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| CapScan collection capsule | Device | The CapScan collection capsule is a single-use device that collects fluids from the gastrointestinal tract for analysis ex-vivo. |
| Measure | Description | Time Frame |
|---|---|---|
| Sampling of gut microbiota | > 75% of the retrieved CapScan devices to provide at least 3 million metagenomic DNA sequencing reads of gut microbes from the intestinal tract, and at least 900 annotated gut metabolites. | 56 days |
| Sampling of gut metabolome | >75% of the retrieved CapScan devices to provide at least 900 annotated gut metabolites. | 56 days |
| Measure | Description | Time Frame |
|---|---|---|
| Effect of rifaximin on gut microbiota | Determine the effect of rifaximin on the regional compositions of the gut microbiota among SIBO patients by assessing the diversity, centroids and distributions of microbial taxa from sequenced CapScan samples of each subject before and after rifaximin at 5 time points. | 56 days |
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Inclusion Criteria:
Exclusion Criteria:
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| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Jennifer Taufui | Contact | (650) 988-7530 | svgistaff@gmail.com |
| Name | Affiliation | Role |
|---|---|---|
| George Triadafilopoulos | Silicon Valley Gastroenterology | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Silicon Valley Gastroenterology | Recruiting | Mountain View | California | 94040 | United States |
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| Effect of rifaximin on gut metabolome |
Determine the effect of rifaximin on the regional compositions of the gut metabolites among SIBO patients by assessing the changes to metabolite classes and metabolic pathways as measured by LC/MS-MS analysis of CapScan samples for each subject before and after rifaximin at 5 time points. |
| 56 days |