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| Name | Class |
|---|---|
| Galatea.Bio | UNKNOWN |
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The aim of GENESIS clinical study is to map the HLA genomic region in the Greek population and evaluate possible correlations with selected underlying diseases.
The GENESIS study is a multicenter, prospective, non-interventional, clinical study with a target of 12,000 subjects and an anticipated total duration of 36 months. The aim of study GENESIS is to provide a pilot map of HLA genetic variation in the Greek population in order to be used in medical research and for possible clinical applications (evaluation of possible correlations with selected underlying diseases). During the study, each subject will conduct one visit to the participating cite, in which they will provide:
Upon completion of the data registry, two buccal swabs will be collected per subject and they will be stored at ALTP premises until their shipment to Galatea.Bio. All buccal swab samples will be subjected to genetic material (DNA) extraction. The DNA samples will be further proceeded for HLA genotyping analysis. A follow up analysis will be performed in selected DNA samples via full low-pass whole genome sequencing (LP-WGS), which aims to further investigate the association between the HLA region and autoimmune diseases.
Upon completion of the analysis, an individualized ancestry report will be securely made available to all study subjects which they can access, as and if they elect to.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Greek population | The enrolled subjects will be managed as a single group. |
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| Measure | Description | Time Frame |
|---|---|---|
| Allele frequency of HLA-alleles at the Greek population level | To assess the HLA allelic diversity of Greek population | 36th month |
| Measure | Description | Time Frame |
|---|---|---|
| Prevalence of selected HLA-related diseases in the Greek population | Characterization of the allelic and haplotypic HLA frequency distribution in the Greek population and comparison with global HLA databases. | 36th month |
| Relative Risk (Risk Ratio (RR) or Odds Ratio (OR)) of HLA markers on diseases of interest |
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Inclusion Criteria:
The study will include adult subjects (age ≥ 18) that:
Exclusion Criteria:
Subjects not able to provide written informed consent (e.g. ICU patients, mental illness patients, lack of legal capacity).
Subjects who have had an allogeneic (non-self-donor):
Subjects who participated in an interventional clinical trial in the past that according to the subject's physician opinion might have had an impact on their HLA genome.
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The study will recruit and enroll eligible subjects possessing a Greek social security number, who are visiting hospitals/clinics and/or other private laboratory practices (incl. clinics and health care groups) as part of standard clinical practice.
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Efi Giannopoulou | Contact | +306974784009 | egiannopoulou@lifetechpark.com |
| Name | Affiliation | Role |
|---|---|---|
| Efi Giannopoulou | Athens LifeTech Park | Study Director |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| 2nd Propaedeutic Department of Internal Medicine, Attikon University General Hospital | Not yet recruiting | Chaïdári | Attica | 12462 | Greece |
| PubMed Identifier | Type | Citation | Retractions |
|---|---|---|---|
| 28102034 | Background | Sanchez-Mazas A, Nunes JM, Middleton D, Sauter J, Buhler S, McCabe A, Hofmann J, Baier DM, Schmidt AH, Nicoloso G, Andreani M, Grubic Z, Tiercy JM, Fleischhauer K. Common and well-documented HLA alleles over all of Europe and within European sub-regions: A catalogue from the European Federation for Immunogenetics. HLA. 2017 Feb;89(2):104-113. doi: 10.1111/tan.12956. | |
| 29292391 |
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No plan for sharing IPD at this stage
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Two buccal swabs per subject
Evaluation of the association between HLA alleles and/or haplotypes, and selected diseases |
| 36th month |
| 2nd Department of Neurology, AHEPA University Hospital | Not yet recruiting | Thessaloniki | Thessaloniki | 54636 | Greece |
|
| Department of Respiratory Medicine, University General Hospital of Alexandroupolis | Recruiting | Alexandroupoli | Thrace | 68100 | Greece |
|
| Department of Infectious Diseases, 2nd Department of Internal Medicine, University General Hospital of Alexandroupolis | Recruiting | Alexandroupoli | 68100 | Greece |
|
| Department of Cardiology, University General Hospital of Heraklion | Not yet recruiting | Heraklion | 71110 | Greece |
|
| Department of Rheumatology, University Hospital of Heraklion | Not yet recruiting | Heraklion | 71110 | Greece |
|
| Department of Respiratory, University Hospital of Ioannina | Recruiting | Ioannina | 45500 | Greece |
|
| Department of Haematology, University General Hospital of Larissa | Not yet recruiting | Larissa | 41110 | Greece |
|
| Dendrou CA, Petersen J, Rossjohn J, Fugger L. HLA variation and disease. Nat Rev Immunol. 2018 May;18(5):325-339. doi: 10.1038/nri.2017.143. Epub 2018 Jan 2. |
| 32535895 | Background | Zhou Y, Krebs K, Milani L, Lauschke VM. Global Frequencies of Clinically Important HLA Alleles and Their Implications For the Cost-Effectiveness of Preemptive Pharmacogenetic Testing. Clin Pharmacol Ther. 2021 Jan;109(1):160-174. doi: 10.1002/cpt.1944. Epub 2020 Jul 26. |
| ID | Term |
|---|---|
| D012120 | Respiration Disorders |
| D007676 | Kidney Failure, Chronic |
| D002318 | Cardiovascular Diseases |
| D008659 | Metabolic Diseases |
| D001523 | Mental Disorders |
| D009422 | Nervous System Diseases |
| D005767 | Gastrointestinal Diseases |
| D006402 | Hematologic Diseases |
| D003095 | Collagen Diseases |
| ID | Term |
|---|---|
| D012140 | Respiratory Tract Diseases |
| D051436 | Renal Insufficiency, Chronic |
| D051437 | Renal Insufficiency |
| D007674 | Kidney Diseases |
| D014570 | Urologic Diseases |
| D052776 | Female Urogenital Diseases |
| D005261 | Female Urogenital Diseases and Pregnancy Complications |
| D000091642 | Urogenital Diseases |
| D052801 | Male Urogenital Diseases |
| D002908 | Chronic Disease |
| D020969 | Disease Attributes |
| D010335 | Pathologic Processes |
| D013568 | Pathological Conditions, Signs and Symptoms |
| D009750 | Nutritional and Metabolic Diseases |
| D004066 | Digestive System Diseases |
| D006425 | Hemic and Lymphatic Diseases |
| D003240 | Connective Tissue Diseases |
| D017437 | Skin and Connective Tissue Diseases |
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