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| Name | Class |
|---|---|
| Hanyang University Seoul Hospital | OTHER |
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The goal of this prospective, observational study is to collect health-related data including microbiome, blood samples, and dietary habits from the oral and gastrointestinal tracts in healthy subjects. In addition, the study aims to perform microbiome and multi-omics analysis on the collected samples and build an integrated database of the data.
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| Measure | Description | Time Frame |
|---|---|---|
| Relative abundance of microbome | Analysis of the microbial community composition will be performed using 16s rRNA gene amplicon sequencing. The relative abundance of microbial species at the genus or family level will be assessed. | 5 years |
| Alpha diversity of microbiome (Shannon diversity index) | Alpha diversity will be measured using Shannon diversity index to combine ASV richness and abundance into a single evenness value | 5 years |
| Alpha diversity of microbiome (Fisher's index) | Alpha diversity will be measured using Fisher's index, which calculates the relationship between abundance and number | 5 years |
| Alpha diversity of microbiome (Faith's phylogenetic diversity whole tree) | Alpha diversity will be measured using Faith's phylogenetic diversity whole tree, representing the sum of all branch lengths as a measure of phylogeny and diversity. | 5 years |
| Measure | Description | Time Frame |
|---|---|---|
| Gene count (transcriptomics) | Analysis of bacterial mRNA profiles will be performed through read mapping using NCBI RefSeq database, quantification of gene and transcript & bacterial taxonomic profiling using HUMAnN and MetaPhlAn pipeline, transcript quantification and identification of differentially expressed gene using SALMON and human reference genome fastq file. | 5 years |
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Inclusion Criteria:
Exclusion Criteria:
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Healthy volunteers
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Bo-Hyung Kim, M.D., Ph.D. | Contact | +82-2-958-9765 | bhkim98@khu.ac.kr |
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Kyung Hee University Hospital | Recruiting | Seoul | 02447 | South Korea |
| PubMed Identifier | Type | Citation | Retractions |
|---|---|---|---|
| 40784769 | Derived | Kim HS, Kim BH, Nam B, Oh SJ, Park SK, Lee SW, Lee JY, Jo S, Lee YA, Lee JY, Park DI, Kim TH, Lee CK. Oral-gut microbiome axis in a Korean cohort with inflammatory bowel disease and ankylosing spondylitis (INTEGRATE): a prospective and observational study protocol. BMJ Open. 2025 Aug 10;15(8):e092075. doi: 10.1136/bmjopen-2024-092075. |
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| Metabolite peak area (metabolomics) | Analysis of metabolites will be performed by matching metabolite ID achieved from LC/MS with Human Metabolome Database (HMDB) for metabolite identification. Analysis on the difference of metabolite between groups will be performed by PCA or PLS-DA using MZmine3, OpenChrome or Metaboanalyst v5.0. | 5 years |
| Relative abundance (virome) | Analysis of total virus profiles will be performed by comparing viral protein sequence with NCBI refseq viral database and taxonomy annotation. | 5 years |
| Number of differentially abundant bacterial strains isolated (culturomics) | Bacterial strains that exhibit differential abundance between healthy individuals and patients will be inoculated, isolated, and identified. | 5 years |