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| Name | Class |
|---|---|
| Centre de Recherche en Nutrition Humaine d'Auvergne | OTHER_GOV |
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The role of the intestinal microbiota on health is now well recognised, and diet is one of the factors influencing the maintenance of a healthy intestinal microbiota. More specifically, the consumption of fruit, vegetables and cereals is associated with good health and, in particular, with an increase in the relative abundance of bacterial groups described as beneficial. To date, a large number of bacterial species in the intestinal microbiota have yet to be isolated and cultivated, which limits the characterisation of their potential health benefits. In order to isolate and cultivate these intestinal bacteria, it is particularly relevant to recruit individuals with a high-fibre diet.
Since two decades, numerous studies have been performed to better understand the role of the gut microbiota in health and disease. An imbalance in the intestinal microbiota, known as dysbiosis, is frequently described as a cause of many chronic diseases and metabolic dysfunctions in humans. Among the factors that play an important role in maintaining this balance, diet plays a predominant role. More specifically, the consumption of fruit, vegetables and cereals is associated with good health and, in particular, with an increase in the relative abundance of bacterial groups described as beneficial. Modulating the intestinal microbiota via the or directly by providing these beneficial bacteria (next generation probiotics NGPs) is therefore a possible promising approach for the prevention and/or treatment of pathologies. To date, a large number of bacterial species in the intestinal microbiota have yet to be isolated and cultivated, which limits the characterization of their potential health benefits. Having strains that can be isolated and cultured is an essential step in phenotyping and characterization. In order to isolate and cultivate these intestinal bacteria, it is particularly important to recruit individuals with a high-fiber diet. In this context, a positive selection of donors, based on their dietary profiles highly enriched in fiber, is essential. In this study, the aim is to identify in silico unprecedented potentially new beneficial gut bacteria, and isolate, culture and characterize these bacterial species for their potential. This will be an innovative approach, using culturomics tools guided by metagenomics to isolate them. To do this, the fecal samples of 10 healthy volunteers will be collected with a regular and diversified intake of fruit, vegetables and cereals, which encourage the growth of beneficial micro-organisms and increase the richness of the intestinal microbiota.
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| Measure | Description | Time Frame |
|---|---|---|
| Isolation and culture of one isolate from each target species | Successful isolation and culture of at least one isolate from each target species previously identified through metagenomic data analyses. | Up to 3 years |
| Measure | Description | Time Frame |
|---|---|---|
| metagenomic profiles in relation to dietary profiles | To obtain metagenomic profiles using shotgun sequencing of the gut microbiota (bacterial species), in relation to dietary profiles | Up to 3 years |
| growth capacity of the isolates |
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Inclusion Criteria:
Exclusion Criteria:
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General population residing in Clermont-Ferrand (France)
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Aurélie CAILLE, MSc | Contact | 04 73 75 42 73 | acaille@chu-clermontferrand.fr | |
| Nathalie MEUNIER, PhD | Contact | 04 73 75 42 73 | nmeunier@chu-clermontferrand.fr |
| Name | Affiliation | Role |
|---|---|---|
| Victoria MESLIER, PhD | Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement | Study Director |
| Claire CHERBUY, PhD | Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| CRNH Auvergne | Recruiting | Clermont-Ferrand | 63009 | France |
| PubMed Identifier | Type | Citation | Retractions |
|---|---|---|---|
| 40224142 | Derived | Caille A, Connan C, Lyon Belgy N, Borezee E, Cherbuy C, Meunier N, Meslier V. Positive nutritional selection of adults with healthy lifestyle and high daily fiber consumption for the isolation of beneficial intestinal bacteria: The iTARGET cohort study protocol. MethodsX. 2025 Mar 17;14:103268. doi: 10.1016/j.mex.2025.103268. eCollection 2025 Jun. |
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No sharing planned
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Fecal samples
To characterize the growth (growth monitoring by optical density) of the isolates of interest.
| Up to 3 years |
| Functional potential of the isolates | To characterize the genomic features of the isolates of interest (functional potential through genome annotation). | up to 3 years. |
| Phenotypic caracterization of the isolates | To characterize phenotypically the isolates of interest by API gallery. | Up to 3 years |