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| ID | Type | Description | Link |
|---|---|---|---|
| UH2CA234306 | U.S. NIH Grant/Contract | View source | |
| U01CA243078 | U.S. NIH Grant/Contract | View source | |
| NCI-2022-05844 | Registry Identifier | CTRP (Clinical Trial Reporting Program) | |
| 19-012665 | Other Identifier | Mayo Clinic Institutional Review Board |
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| Name | Class |
|---|---|
| National Cancer Institute (NCI) | NIH |
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This study evaluates pre-analytical factors affecting circulating tumor deoxyribonucleic acid (ctDNA) analysis in breast cancer that not spread beyond the breast and or lymph nodes (early and locally advanced). ctDNA refers to freely circulating tumor DNA fragments found in the blood plasma. Pre-analytical factors such as blood collection tubes, delays in separation of plasma, centrifugation speeds, storage conditions, shipping and DNA extraction methods can all affect ctDNA measurements. Inappropriate processing can cause breaking down of the membrane (lysis) of peripheral blood cells that release background wild-type DNA and may also cause degradation of circulating tumor-specific DNA fragments. Both mechanisms will dilute levels of ctDNA in plasma and make it more difficult to detect. Evaluating the pre-analytical factors of the collection of blood and left over tissue samples for the research of cancer may help researchers to evaluate the impact of the blood collection/processing and long-term storage from patients with locally advanced breast cancer.
PRIMARY OBJECTIVES:
I. To evaluate the impact of blood collection/processing. II. To evaluate the impact of long-term storage of plasma and extracted DNA.
OUTLINE: This is an observational study.
Patients undergo blood sample collection throughout the study. Patients also undergo collection of leftover tissue samples from standard of care (SOC) procedures and have medical records reviewed.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Observational (Biospecimen collection, medical record) | Patients undergo blood sample collection throughout the study. Patients also undergo collection of leftover tissue samples from SOC procedures and have medical records reviewed. |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Biospecimen Collection | Procedure | Undergo blood and leftover tissue sample collection |
|
| Measure | Description | Time Frame |
|---|---|---|
| Change in tumor specific circulating tumor deoxyribonucleic acid (ctDNA) levels | Will be measured as tumor fraction (%), using TARgeted DIgital Sequencing (TARDIS). | Baseline to 5 years |
| Measure | Description | Time Frame |
|---|---|---|
| Change in total cell-free DNA concentration | Will be measured in genome copies/ml of plasma, using the Quality Assessment (QA) assay. | Baseline to 5 years |
| Change in total cell-free DNA fragment size profile |
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Inclusion Criteria:
Exclusion Criteria:
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Patients with stage I-III breast cancer.
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| Name | Affiliation | Role |
|---|---|---|
| Barbara A. Pockaj, MD | Mayo Clinic | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Mayo Clinic in Arizona | Scottsdale | Arizona | 85259 | United States |
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| Label | URL |
|---|---|
| Mayo Clinic Clinical Trials | View source |
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| Type | Includes Protocol | Includes SAP | Includes ICF | Document Label | Document Date | Document Uploaded Date | Document File Name |
|---|---|---|---|---|---|---|---|
| ICF | No | No | Yes | Informed Consent Form | Sep 24, 2024 | Sep 2, 2025 |
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Blood, tissue
| Electronic Health Record Review | Other | Medical records are reviewed |
|
Will be measured as % fragmented, using the Quality Assessment (QA) assay.
| Baseline to 5 years |
| Change in tumor-specific circulating tumor deoxyribonucleic acid (ctDNA) fragment size profile | Will be measured as average fragment size, using TARgeted DIgital Sequencing (TARDIS). | Baseline to 5 years |
| Background error rate | Will be measured as errors per bp sequenced, measured using TARgeted DIgital Sequencing (TARDIS). | Baseline to 5 years |
| ICF_000.pdf |
| ID | Term |
|---|---|
| D013048 | Specimen Handling |
| ID | Term |
|---|---|
| D019411 | Clinical Laboratory Techniques |
| D019937 | Diagnostic Techniques and Procedures |
| D003933 | Diagnosis |
| D008919 | Investigative Techniques |
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