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| Name | Class |
|---|---|
| Institut National de la Santé Et de la Recherche Médicale, France | OTHER_GOV |
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Neurodegeneration with brain iron accumulation (NBIA) represent a group of rare neurodevelopmental diseases, genetically as well as phenotypically heterogeneous.
The diagnosis is based on brain MRI. It is also based on genetic testing. However overlaps exist between the different clinical presentations and the molecular diagnosis may be misinterpreted.
Two main purposes must be addressed to get a better molecular diagnosis: on one hand reaching enough exhaustivity which may be performed with a larger gene panel and next generation sequencing; on the other hand, it is now necessary to validate or infirm the deleterious consequences of variants with the help of functional studies.
Neurodegeneration with brain iron accumulation (NBIA) represent a group of rare neurodevelopmental diseases, genetically as well as phenotypically heterogeneous.
The diagnosis is based on brain MRI. It shows abnormal deposit of iron in the basal ganglia, especially in the globus pallidus and the substance nigra. It is also based on genetic testing. Ten individualized forms are now described. However overlaps exist between the different clinical presentations and the molecular diagnosis may be misinterpreted because of variants, named as variants of unknown signification, whom the pathogenic role is not proven. Approximately half of the clinically relevant cases with iron deposits on brain MRI remain without any molecular deleterious alteration.
Two main purposes must be addressed to get a better molecular diagnosis: on one hand reaching enough exhaustivity which may be performed with a larger gene panel and next generation sequencing; this panel will include new genes and could be enlarged as more genes are identified. On the other hand, it is now necessary to validate or infirm the deleterious consequences of variants with the help of functional studies.
Four major pathways are involved in the pathophysiology of NBIA: iron and lipids metabolisms, mitochondrial metabolism and autophagy.
Considering that biochemical mechanisms inside the mitochodrion are involved in these four pathways, the investigators performed a first test starting from patient's fibroblasts and analyzed the literature in order to define the parameters that could be pertinent as biological markers of NBIA.
Two different groups will be studied :
The investigators plan to transfer these new genetic and biochemical strategies to the diagnostic procedures with the support of the french rare disease network in charge of neurodegenerations and the "CARAMMEL" network involved in the diagnosis of mitochondrial diseases.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Patients with NBIA who remain without molecular diagnosis | A group of 40 patients with NBIA, who remain without molecular diagnosis |
| |
| Patients with NBIA with identified mutations in genes | A group of patients with 2 frequent forms of NBIA, carrying mutations in genes (already studied in the CHU molecular diagnostic laboratory) |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Establishment of mitochondrial markers | Genetic | Establishment of mitochondrial markers from fibroblasts in culture, obtained from a skin biopsy. Establishment of yeast models to show biochemical mitochondrial alterations: introduction of missense variants in the pantothenate kinase yeast gene Cab1 whose deletion is lethal, followed by growth of mutant strains on fermentation and respiratory media. |
| Measure | Description | Time Frame |
|---|---|---|
| Sequencing tests of a panel of 22 genes using a dedicated custom capture and a medium throughput sequencing protocol. | Records of coverage (% of designed regions) | through study completion, an average of 2 years |
| Sequencing tests of a panel of 22 genes using a dedicated custom capture and a medium throughput sequencing protocol. | Records of depth of sequencing (reads number) | through study completion, an average of 4 years |
| Measure | Description | Time Frame |
|---|---|---|
| Identification of the dominant form using biochemical analysis in patient's fibroblasts | Counting of mitochondria with Voltage-dependent anion channel (VDAC) labeling | through study completion, an average of 2 years |
| Identification of the dominant form using biochemical analysis in patient's fibroblasts |
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Inclusion Criteria:
Exclusion Criteria:
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Patients with NBIA
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| Name | Affiliation | Role |
|---|---|---|
| Patricia FERGELOT MAURIN | University Hospital, Bordeaux | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Centre Hospitalier Universitaire de Bordeaux | Talence | France |
| PubMed Identifier | Type | Citation | Retractions |
|---|---|---|---|
| 37605305 | Derived | Angelini C, Durand CM, Fergelot P, Deforges J, Vital A, Menegon P, Sarrazin E, Bellance R, Mathis S, Gonzalez V, Renaud M, Frismand S, Schmitt E, Rouanet M, Burglen L, Chabrol B, Desnous B, Arveiler B, Stevanin G, Coupry I, Goizet C. Autosomal Dominant MPAN: Mosaicism Expands the Clinical Spectrum to Atypical Late-Onset Phenotypes. Mov Disord. 2023 Nov;38(11):2103-2115. doi: 10.1002/mds.29576. Epub 2023 Aug 21. |
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cutaneous biopsy and blood samples
|
| Sequencing tests | Genetic | sequencing tests of a panel of 22 genes (9 already known and 13 new genes) using a dedicated custom capture and a medium throughput sequencing protocol. |
|
Measurements of iron and ferritin cellular levels after iron deprivation and iron loading |
| through study completion, an average of 2 years |
| ID | Term |
|---|---|
| D006211 | Pantothenate Kinase-Associated Neurodegeneration |
| ID | Term |
|---|---|
| D001480 | Basal Ganglia Diseases |
| D001927 | Brain Diseases |
| D002493 | Central Nervous System Diseases |
| D009422 | Nervous System Diseases |
| D019150 | Neuroaxonal Dystrophies |
| D009069 | Movement Disorders |
| D020271 | Heredodegenerative Disorders, Nervous System |
| D019636 | Neurodegenerative Diseases |
| D030342 | Genetic Diseases, Inborn |
| D009358 | Congenital, Hereditary, and Neonatal Diseases and Abnormalities |
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