Not provided
| ID | Type | Description | Link |
|---|---|---|---|
| 2017-3337 | Other Identifier | METC Oost Nederland (Ethical Board) |
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
| Name | Class |
|---|---|
| UMC Utrecht | OTHER |
Not provided
Not provided
Not provided
We will investigate whether human endotoxemia induces changes in human bone marrow cells and their downstream effector cells. To comprehensively investigate underlying mechanisms behind functional and transcriptional changes in these cell types, we will use state-of-the-art systems biology techniques, including single cell transcriptomics (epi)genetics, and metabolomics.
In the present study, we want to further elucidate the mechanisms behind systemic inflammation and endotoxin tolerance in vivo in humans by focusing on functional changes in hematopoietic stem and progenitor cells. Healthy male volunteers will be challenged with endotoxin to evoke a transient systemic inflammatory response. To evaluate the responses over time, blood and bone marrow aspirates will be collected at multiple timepoints. To comprehensively investigate underlying mechanisms behind functional changes, we will use state-of-the-art systems biology techniques, including single cell transcriptomics, epigenetics (e..g. scATACseq), and metabolomic. As such, this study will yield a comprehensive insight into inflammatory signaling in the different compartments of the body and will thereby improve our understanding of systemic inflammation, endotoxin tolerance,and sepsis, possibly revealing new therapeutic targets to improve sepsis outcome.
Not provided
Not provided
Not provided
Not provided
| Label | Type | Description | Intervention Names |
|---|---|---|---|
| LPS group | Experimental | Healthy male volunteers that will receive an intravenous administration of LPS (2ng/kg) twice. |
|
| Placebo group | Placebo Comparator | Healthy male volunteers that will receive an intravenous administration of placebo (NaCl 0.9%). |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| LPS | Drug | This is a non-investigational product. LPS is used as challenge agent to achieve a controlled inflammatory state. |
|
| Measure | Description | Time Frame |
|---|---|---|
| Change in function and transcriptional pathways | The change in function and transcriptional pathways (gene expression) of hematopoietic progenitor cells and blood leukocytes (using various functional assays and single cell RNAseq) following human endotoxemia. | 15 days |
| Measure | Description | Time Frame |
|---|---|---|
| Change in (Genome-wide) chromatin accessibility | The change in epigenomic profile (chromatin accessibility) of hematopoietic progenitor cells and blood leukocytes (using single cell ATACseq) following human endotoxemia. | 15 days |
| Change in cellular metabolism |
Not provided
Inclusion Criteria:
Exclusion Criteria:
Not provided
Not provided
Not provided
Not provided
Not provided
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Intensive Care Medicine, Radboud University Nijmegen Medical Centre | Nijmegen | Gelderland | 6500 HB | Netherlands |
Single cell transcriptional/gene expression data will be shared.
Not provided
Bulk RNA-seq and scRNA-seq data for this study can be downloaded from GEO database (https://www.ncbi.nlm.nih.gov/geo/) with the accession number: GSE212093.
Codes used to perform the data analysis related to this study are available at https://github.com/fkeramati/LPS-SI
Not provided
Not provided
| ID | Term |
|---|---|
| D018805 | Sepsis |
| D019446 | Endotoxemia |
| ID | Term |
|---|---|
| D007239 | Infections |
| D018746 | Systemic Inflammatory Response Syndrome |
| D007249 | Inflammation |
| D010335 | Pathologic Processes |
Not provided
Not provided
| ID | Term |
|---|---|
| D008070 | Lipopolysaccharides |
| D004731 | Endotoxins |
| ID | Term |
|---|---|
| D006001 | Glycoconjugates |
| D002241 | Carbohydrates |
| D011135 | Polysaccharides, Bacterial |
| D011134 | Polysaccharides |
Not provided
Not provided
An pilot study to explore the effects of a LPS-challenge on functional capacity and gene expression of human stem and hematopoietic progenitor cells and blood leukocytes. Subjects will be allocated to a LPS group (n=8 healthy volunteers) that will be challenged with endotoxin twice, or to a placebo group (n=4) who will undergo the same study procedures but receive a placebo challenge (NaCl 0.9%).
Not provided
Not provided
LPS is a non-investigational product and will only be used as a challenge agent to induce systemic inflammation. Since the effects op LPS-induced systemic inflammation are profound, no masking will be required.
Not provided
| Placebo | Drug | Injection of NaCl 0.9%. |
|
|
The change in cellular metabolism of hematopoietic progenitor cells and blood leukocytes (e.g. using Seahorse analyzer, CYTOF) following human endotoxemia. |
| 15 days |
| Change in macrophage activity in the brain | To changes in tissue resident macrophages activity in the brain (assessed using 18F-DPA-714 labeling and PET examinations) following human endotoxemia. | 15 days |
| Life-span of blood leukocytes during homeostasis | To assessment of the life-span and transit times of different subsets of leukocytes and their progenitors in the bone marrow of humans at homeostasis (using Deuterium labeling). | 8 days |
| Life-span of blood leukocytes during endotoxemia | To determine the life-span and transit times of different subsets of leukocytes and their progenitors in the bone marrow of humans during human endotoxemia (using Deuterium labeling). | 8 days |
| D013568 |
| Pathological Conditions, Signs and Symptoms |
| D016470 | Bacteremia |
| D014115 | Toxemia |
| D008055 |
| Lipids |
| D000942 | Antigens, Bacterial |
| D000941 | Antigens |
| D001685 | Biological Factors |
| D001427 | Bacterial Toxins |
| D014118 | Toxins, Biological |