Not provided
| ID | Type | Description | Link |
|---|---|---|---|
| 2024-A01311-46 | Other Identifier | ID-RCB number |
Not provided
Not provided
The study could not begin
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
| Name | Class |
|---|---|
| URC-CIC Paris Descartes Necker Cochin | OTHER |
Not provided
Not provided
Not provided
Mutations in the genes encoding cytosolic aminoacyl-tRNA synthetases are responsible for early-onset multisystemic diseases including to varying degrees interstitial lung disease, liver damage, neurological and digestive disorders, and systemic inflammation. These are rare and severe diseases whose pathophysiology is poorly understood.
The investigative team hypothesizes that mutations within these genes are responsible for a decrease in protein translation and lead to a cellular stress response similar to that induced by amino acid deprivation. The investigative team also hypothesizes that these alterations could be corrected by high-dose supplementation in the culture medium of the corresponding amino acid.
The main objective of the study is to precisely determine the consequences of cytosolic aminoacyl-tRNA synthetase mutations at the cell level on protein translation.
Mutations in the genes encoding cytosolic aminoacyl-tRNA synthetases are responsible for early-onset multisystemic diseases including to varying degrees interstitial lung disease, liver damage, neurological and digestive disorders, and systemic inflammation. These are rare and severe diseases whose pathophysiology is poorly understood.
The investigative team hypothesizes that mutations within these genes are responsible for a decrease in protein translation and lead to a cellular stress response similar to that induced by amino acid deprivation. The investigative team also hypothesizes that these alterations could be corrected by high-dose supplementation in the culture medium of the corresponding amino acid.
The main objective of the study is to precisely determine the consequences of cytosolic aminoacyl-tRNA synthetase mutations at the cell level on protein translation.
The parameters below will be studied in vitro in cell culture from skin biopsies of patients and control cells:
The results of these studies will be compared:
Not provided
Not provided
Not provided
Not provided
| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Patients | Experimental | Patients with mutations in genes encoding cytosolic aminoacyl-tRNA synthetases and cared at Necker Hospital. |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Skin biopsy | Other | A skin biopsy performed on the forearm or thigh depending on the patient's age and wishes, with a biopsy punch with a diameter of 3 to 4 mm depending on the child's age (3 for children under 3 years, 4 beyond). Culture of fibroblasts and immortalization. |
| Measure | Description | Time Frame |
|---|---|---|
| Determination of total protein content | Determination of total protein content by Bicinchoninic acid assay. | Day 0 |
| Incorporation of d-methionine and d-phenylalanine into proteins | Incorporation of methionine and phenylalanine by labelled amino-acid fluorescent assays using ready-to-use kits. | Day 0 |
| Study of polysomes profiling | Study of polysome profils by differential sedimentation on sucrose gradients. | Day 0 |
| Study of the assembly of the ribosomal 43S pre-initiation complex | Study of the assembly of the ribosomal 43S pre-initiation complex by co-immunoprecipitation experiments. | Day 0 |
| Phosphorylation of eIF2α and 4EBP and the expression of ATF4 | Phosphorylation of eIF2α and 4EBP and the expression of ATF4 by western blot. | Day 0 |
| Ribosome profiling | Ribosome profiling by high throughput sequencing. | Day 0 |
| Transfer RNA (tRNA) sequencing | Transfer RNA (tRNA) sequencing by high throughput sequencing. | Day 0 |
| Production of reactive oxygen species (ROS) |
Not provided
Not provided
Inclusion Criteria:
Exclusion Criteria:
- Non-consent of one of the holders of parental authority or of the minor patient or of adult patient
Contrôl patients :
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
| Name | Affiliation | Role |
|---|---|---|
| Alice HADCHOUEL, MD, PhD | Assistance Publique - Hôpitaux de Paris | Principal Investigator |
| Isabelle SERMET-GAUDELUS, MD, PhD | Assistance Publique - Hôpitaux de Paris | Study Director |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Hôpital Necker-Enfants Malades | Paris | 75015 | France |
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Not provided
Production of reactive oxygen species (ROS) by fluorescent measurement after cells' incubation with 2',7'- dichlorodihydrofluorescein diacetate (H2DCFDA).
| Day 0 |
| ID | Term |
|---|---|
| D008107 | Liver Diseases |
| D009461 | Neurologic Manifestations |
| D010182 | Pancreatic Diseases |
| ID | Term |
|---|---|
| D004066 | Digestive System Diseases |
| D009422 | Nervous System Diseases |
| D012816 | Signs and Symptoms |
| D013568 | Pathological Conditions, Signs and Symptoms |
Not provided
Not provided