A Phase I/II Study of Personalized Neoantigen Peptide-Based Vaccine in Combination With Pembrolizumab in Advanced Solid Tumors (PNeoVCA)
A Phase I/II Study of Personalized Neoantigen Peptide-Based Vaccine in Combination With Pembrolizumab in Advanced Solid Tumors (PNeoVCA)
This phase I/II trial tests the safety and tolerability of an experimental personalized vaccine when given by itself and with pembrolizumab in treating patients with solid tumor cancers that have spread to other places in the body (advanced). The experimental vaccine is designed target certain proteins (neoantigens) on individuals' tumor cells. Immunotherapy with monoclonal antibodies, such as pembrolizumab, may help the body's immune system attack the cancer, and may interfere with the ability of tumor cells to grow and spread. Giving the personalized neoantigen peptide-based vaccine with pembrolizumab may be safe and effective in treating patients with advanced solid tumors.
PRIMARY OBJECTIVE:
I. To evaluate the safety of personalized neoantigen peptide vaccine in combination with pembrolizumab in advanced solid cancers. (Phase I and Pilot Cohort 5) II. To evaluate and estimate 24-months event-free survival (EFS) rate per Kaplan-Meier method in triple-negative breast cancer (TNBC) patients with residual cancer burden-2 and 3 (RCB-2 and RCB-3) after neoadjuvant pembrolizumab-based chemotherapy treated with neoantigen vaccine in combination with pembrolizumab. (Phase II Cohort 3) III. To evaluate and estimate 24-months event-free survival (DFS) rate per Kaplan-Meier method in stage II/III non-small cell lung cancer (NSCLC) patients after surgery treated with neoantigen vaccine in combination with pembrolizumab. (Phase II Cohort 4)
SECONDARY OBJECTIVES:
I. To evaluate and estimate the immunogenicity response rate in patients with advanced solid cancers receiving personalized neoantigen peptide vaccine in combination with pembrolizumab. (Phase I and Pilot Cohort 5) II. To obtain preliminary information on the immunogenicity of neoantigen in induction of specific cellular immune responses and humoral immune response.
III. To evaluate and estimate the immunogenicity response rate in TNBC patients with residual cancer burden-2 and 3 (RCB-2 and RCB-3) after neoadjuvant pembrolizumab-based chemotherapy treated with neoantigen vaccine in combination with pembrolizumab. (Phase II Cohort 3) IV. To evaluate adverse event profile in in TNBC patients with residual cancer burden-2 and 3 (RCB-2 and RCB-3) after neoadjuvant pembrolizumab-based chemotherapy treated with neoantigen vaccine in combination with pembrolizumab. (Phase II Cohort 3) V. To evaluate and estimate the vaccine immunogenicity response rate in stage II/III NSCLC patients after surgery treated with neoantigen vaccine in combination with pembrolizumab. (Phase II Cohort 4) VI. To evaluate adverse event profile in stage II/III NSCLC patients after surgery treated with neoantigen vaccine in combination with pembrolizumab. (Phase II Cohort 4)
EXPLORATORY OBJECTIVES:
I. To obtain preliminary information on the immunogenicity of neoantigen in induction of specific cellular immune responses and humoral immune response in patients with selected advanced solid tumors. (Phase I and Pilot Cohort 5) II. To obtain preliminary estimates of efficacy as measured by objective response rate (ORR based on Response Evaluation Criteria in Solid Tumors [RECIST]) of personalized neoantigen peptide vaccine and pembrolizumab in patients with selected advanced solid tumors. (Phase I and Pilot Cohort 5) III. To obtain preliminary information of immunity persistence, as well as pre-existing immunity in patients with selected advanced solid tumors. (Phase I and Pilot Cohort 5) IV. To obtain preliminary information on the immunogenicity of neoantigen in induction of specific cellular immune responses and humoral immune response in Cohort 1 (TNBC patients with RCB-2 and RCB-3) and 2 (stage II/III NSCLC patients) separately. (Phase II) V. To obtain preliminary information of immunity persistence, as well as pre-existing immunity in Cohort 1 (TNBC patients with RCB-2 and RCB-3) and 2 (stage II/III NSCLC patients) separately. (Phase II)
OUTLINE: This is a phase I, dose-escalation study of personalized neoantigen vaccine followed by a phase II study. Patients are assigned to 1 of 5 cohorts.
COHORT 1: Patients receive cyclophosphamide intravenously (IV) on day -3. Patients then receive personalized neoantigen vaccine with sargramostim (GM-CSF) subcutaneously (SC) on days 1, 4, 8, and 15 of cycle 1 and on day 1 of cycle 2 in the absence of disease progression or unacceptable toxicity.
COHORT 2: Patients receive cyclophosphamide IV on day -3. Patients then receive personalized neoantigen vaccine with GM-CSF SC on days 1, 4, 8, and 15 of cycle 1 and then on day 1 of cycles 2, 5, and 8. Patients also receive pembrolizumab IV over 30 minutes on day 1 of each cycle. Cycles repeat every 21 days for up to 2 years in the absence of disease progression or unacceptable toxicity.
COHORT 3: Patients with TNBC receive cyclophosphamide IV on day -3. Patients then receive personalized neoantigen vaccine with GM-CSF SC on days 1, 4, 8, and 15 of cycle 1 and then on day 1 of cycles 2, 5, and 8. Patients also receive pembrolizumab IV over 30 minutes on day 1 of each cycle or as clinically indicated. Cycles repeat every 21 days in the absence of disease progression or unacceptable toxicity.
COHORT 4: Patients with NSCLC receive cyclophosphamide IV on day -3. Patients then receive personalized neoantigen vaccine with GM-CSF SC on days 1, 4, 8, and 15 of cycle 1 and then on day 1 of cycles 2, 5, and 8. Patients also receive pembrolizumab IV over 30 minutes on day 1 of each cycle or as clinically indicated. Cycles repeat every 21 days in the absence of disease progression or unacceptable toxicity.
PILOT COHORT 5: Patients with ILC receive cyclophosphamide IV on day -3. Patients then receive personalized neoantigen vaccine with GM-CSF SC on days 1, 4, 8, and 15 of cycle 1 and then on day 1 of cycles 2, 5, and 8. Patients also receive pembroblizumab IV on day of each cycle or as clinically indicated. Cycles repeat every 21 days in the absence of disease progression or unacceptable toxicity.
All patients may undergo tumor biopsy throughout the study. Additionally, patients undergo blood sample collection as well as computed tomography (CT) or magnetic resonance imaging (MRI) throughout the study.
After completion of study treatment, patients are followed up at 30 days and then every 3 months up to 2 years from study enrollment.
Inclusion Criteria COHORT 1 and COHORT 2 are no longer enrolling.
PHASE I PRE-REGISTRATION, ALL:
Willing to provide tissue specimens per protocol, or have clinically collected formalin-fixed paraffin-embedded (FFPE) tissue blocks, or available sequencing data available from commercial or research tests
Measurable disease as defined by RECIST (v 1.1) criteria or non-measurable disease
Patients with actionable genomic abnormality including, but not limited to EGFR, ALK, MET, ROS-1, RET, NTRK, KRAS or BRAF must have received and progressed on at least one line of prior FDA-approved targeted therapy
Provide written informed consent. For pediatric patients (age 16-17 years):
Willing to return to enrolling institution for follow-up
Willing to provide blood specimens for research
Negative pregnancy test 7 days prior to pre-registration for persons of childbearing potential.
Willing to employ highly effective method of contraception from pre-registration through 6 months after final vaccine cycle
Willing to receive tetanus vaccination if subject has not had one ≤ 1 year prior to pre-registration
Eastern Cooperative Oncology Group (ECOG) Performance Status (PS) of 0 or 1
Anticipated life expectancy > 6 months
Recovered from all toxicities associated with prior treatment to acceptable baseline status (see specified inclusion limits for laboratory toxicity) or National Cancer Institute (NCI) Common Terminology Criteria for Adverse Events (CTCAE) v5 Grade 0 or 1, except for toxicities not considered safety risk per treating investigator (e.g., alopecia or vitiligo).
The following lab values obtained ≤ 28 days prior to pre-registration:
PHASE I REGISTRATION, ALL:
Successful sequencing and production of REAL-Neo vaccine
Measurable disease as defined by RECIST (v 1.1) criteria or non-measurable disease
ECOG PS 0 or 1
Anticipated life expectancy > 6 months
The following lab values obtained ≤ 14 days prior to registration:
Provide written informed consent
Willing to provide blood and tissue specimens for research
Willing to return to enrolling institution for follow-up
Patients with actionable genomic abnormality including, but not limited to EGFR, ALK, MET, ROS-1, RET, NTRK, KRAS or BRAF must have also received and progressed on at least one line of prior FDA-approved targeted therapy
Negative pregnancy test ≤ 14 days prior to registration for persons of childbearing potential only
Willing to employ highly effective method of contraception from pre-registration through 6 months after final vaccine cycle
Willing to receive tetanus vaccination if subject has not had one ≤ 1 year prior to pre-registration
Recovered from all toxicities associated with prior treatment to acceptable baseline status or NCI CTCAE v5 Grade of 0 or 1, except for toxicities not considered safety risk per treating investigator (e.g., alopecia or vitiligo)
PHASE II PRE-SCREENING COHORT 3 ONLY:
PHASE II PRE-SCREENING COHORT 4 ONLY:
PHASE II PRE-REGISTRATION COHORT 3 (TNBC) ONLY:
PHASE II PRE-REGISTRATION COHORT 4 (NSCLC) ONLY:
PHASE II PRE-REGISTRATION PILOT AND COHORT 5:
Provide written informed consent. For pediatric patients (age 16-17 years):
Willing to proceed with surgery and provide mandatory tissue specimens or previously collected FFPE tissues for complete exome and transcriptome sequencing or available sequencing data available from commercial or research test
Negative pregnancy test done ≤ 7 days prior to pre-registration for persons of childbearing potential only
Willing to employ a highly effective method of contraception from the time of preregistration through 6 months after the final vaccine cycle
ECOG performance status of 0 or 1
Anticipated life expectancy of > 6 months
Willing to return to enrolling institution for follow-up
PHASE II PRE-REGISTRATION COHORT 5 (ILC) ONLY:
Histologically confirmed invasive lobular carcinoma or other histology with lobular features
PHASE II AND PILOT COHORT 5 REGISTRATION:
Exclusion Criteria
ALL PHASES:
Any of the following because study involves investigational agent whose genotoxic, mutagenic and teratogenic effects on developing fetus and newborn are unknown:
Co-morbid systemic illnesses or other severe concurrent disease which, in judgment of investigator, would make patient inappropriate for entry into this study or interfere significantly with proper assessment of safety and toxicity of prescribed regimens
History of myocardial infarction ≤ 6 months prior to pre-registration, or congestive heart failure requiring use of ongoing maintenance therapy for life-threatening ventricular arrhythmias.
Immunocompromised patients and patients known to be human immunodeficiency virus (HIV) positive and currently receiving antiretroviral therapy
PHASE I PRE-REGISTRATION:
Acute, reversible effect(s) of prior therapy not recovered to baseline regardless of interval since last treatment
Uncontrolled illness including, but not limited to:
Receiving any other investigational agent which would be considered treatment for primary neoplasm, except pembrolizumab
Any prior hypersensitivity or adverse reaction to GM-CSF
Other active malignancy ≤ 3 years prior to pre-registration
History of active autoimmune disease (AD) that required systemic treatment in ≤ 30 days (i.e., use of disease modifying agents, corticosteroids > 10 mg daily prednisone equivalent, or other immunosuppressive drugs) prior to pre-registration
Any of the following prior therapies:
CTCAE ≥ Grade 3 treatment-emergent adverse event (TEAE) to prior checkpoint inhibitor, TEAE requiring systemic corticosteroids (> 10 mg daily prednisone equivalent), or permanent treatment discontinuation due to toxicity
Neuromuscular disorders (e.g. inflammatory myopathies, muscular dystrophy, amyotrophic lateral sclerosis and spinal muscular atrophy) or history of rhabdomyolysis
Active ADs that require chronic systemic steroids (> 10 mg daily prednisone equivalent) or immunosuppressive agents
Systemic corticosteroids (> 10 mg daily prednisone equivalent) or other immunosuppressive medications ≤ 14 days prior to registration
Patients will also be excluded based on tissue/RNA/DNA quality and quantity. If any of the following quality and quantity thresholds are not met, the patient will be excluded:
Evidence of leptomeningeal disease or central nervous system metastases that are untreated, symptomatic, or require steroids >10 mg daily prednisone equivalent
PHASE II PRE-SCREENING:
Uncontrolled illness including, but not limited to:
Any prior hypersensitivity or adverse reaction to GM-CSF
Other active malignancy ≤ 3 years prior to pre-screening
Known history of active AD that has required systemic treatment in the ≤ 30 days (i.e., with use of disease modifying agents, corticosteroids, or immunosuppressive drugs) prior to pre-screening
PHASE II PRE-REGISTRATION
Uncontrolled illness including, but not limited to:
Any prior hypersensitivity or adverse reaction to GM-CSF
Other active malignancy ≤ 3 years prior to pre-registration
Known history of active AD that has required systemic treatment in the ≤ 30 days (i.e., with use of disease modifying agents, corticosteroids > 10 mg daily prednisone equivalent, or other immunosuppressive drugs) prior to pre-registration
Patients will also be excluded based on tissue/RNA/DNA quality and quantity. If any of the following quality and quantity thresholds are not met, patient will be excluded: (1) tumor tissue cellularity equal to or greater than 30%; (2) there are ≥ 2 cores with passing cellularity; (3) ≥ 30% of tumor RNA with fragment sizes are ≥ 200 base pairs (DV200 ≥ 30); (4) < 10% of DNA fragments are smaller than 1 kb; and (5) sufficient amount of both DNA (blood and tumor) and RNA (tumor) for exome sequencing and whole transcriptome sequencing (RNAseq) according to Mayo sequencing core. (Kits and technologies change overtime, so these are not fixed numbers.)
PHASE II REGISTRATION
Evidence of metastatic disease or recurrence
Any of the following prior therapies:
Chemotherapy, experimental drugs (except pembrolizumab), or small molecules inhibitors (except for endocrine therapies) ≤ 3 weeks prior to study treatment
Radiation ≤ 2 weeks prior to study treatment
Major surgery ≤ 4 weeks prior to study treatment
Received live vaccine ≤ 30 days prior to study treatment
CTCAE ≥ grade 3 TEAE to prior checkpoint inhibitor, TEAE requiring systemic corticosteroids (> 10 mg daily prednisone equivalent), or permanent treatment discontinuation due to toxicity
Neuromuscular disorders (e.g., inflammatory myopathies, muscular dystrophy, amyotrophic lateral sclerosis and spinal muscular atrophy), or history of rhabdomyolysis
Active ADs that require chronic systemic steroids (> 10 mg daily prednisone equivalent) or immunosuppressive agents
Other inclusion/exclusion criteria as indicated per protocol not listed here due to limitation in number of characters (text) allowed.
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