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| Name | Class |
|---|---|
| National Health and Medical Research Council, Australia | OTHER |
| University of Melbourne | OTHER |
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This project seeks to perform whole genome sequence (WGS) and whole transcriptome sequence (WTS) analysis on 350 patients with suspected inherited bone marrow failure syndromes and related disorder (IBMFS-RD) in order to increase the genomic diagnostic rate in IBMFS.
IBMFS-RD are a heterogeneous group of rare diseases resulting in significant morbidity and early mortality. These syndromes are individually and collectively rare (affecting <1 per 10,000 people) and a significant proportion are unexplained by mutations in known genes. Whilst rare, these familial conditions are also likely underdiagnosed due to their relatively recent description and also due to lack of accessible genomic testing.
For patients with clinically suspected IBMFS-RD, receiving a genomic diagnosis is critical to:
This study aims to provide WGS and WTS to a national cohort of patients with IBMFS-RD to determine diagnostic rate, health economic impact, health implementation challenges and other exploratory endpoints.
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| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| whole genome and transcriptome sequencing | Diagnostic Test | To perform whole genome/transcriptome analysis of patients in a cohort of up to 350 Australian patients with IBMFS-RD |
| Measure | Description | Time Frame |
|---|---|---|
| Definitive IBMFS-RD diagnosis | IBMFS-RD diagnosis - An initial analysis of a panel of ~100 genes of established relevance to IBMFS-RD phenotype will be performed on all patients. If no molecular diagnosis is made from the panel of genes, further analysis on the genomic data will be performed using the best practice analytical tools and techniques. All results will be communicated to patients. | 3-12 months post baseline |
| Measure | Description | Time Frame |
|---|---|---|
| Develop a whole transcriptome gene expression classifier | To develop a whole transcriptome gene expression classifier to aid diagnosis of IBMFS-RD. | 4 years |
| Cost-effectiveness of genomic testing in patients with suspected IBMFS-RD |
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Inclusion Criteria:
Exclusion Criteria:
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Patients with suspected IBMFS-RD
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Kelsey Man, PhD | Contact | 61 3 8559 5000 | kelsey.man@petermac.org | |
| Piers Blombery, MBBS(Hons) | Contact | piers.blombery@petermac.org |
| Name | Affiliation | Role |
|---|---|---|
| Piers Blombery, MBBS(Hons) | Peter MacCallum Cancer Centre, Australia | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Peter MacCallum Cancer Centre | Recruiting | Melbourne | Victoria | Australia |
| PubMed Identifier | Type | Citation | Retractions |
|---|---|---|---|
| 32054657 | Background | Blombery P, Fox L, Ryland GL, Thompson ER, Lickiss J, McBean M, Yerneni S, Trainer A, Hughes D, Greenway A, Mechinaud F, Wood EM, Lieschke GJ, Szer J, Barbaro P, Roy J, Wight J, Lynch E, Martyn M, Gaff C, Ritchie D. Utility of clinical comprehensive genomic characterization for diagnostic categorization in patients presenting with hypocellular bone marrow failure syndromes. Haematologica. 2021 Jan 1;106(1):64-73. doi: 10.3324/haematol.2019.237693. |
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blood, hair, skin
The cost-effectiveness of genomic testing is assessed by the differences in costs and quality of life associated with genomic testings compared with standard of care. Costs being considered include direct medical costs incurred within the health system arising from utilisation of hospital services and drug dispensing. Quality of life is assessed by EORTC-QLQ-C30 version 3 and CHU9D questionnaires for adult and paediatric patients respectively.
| 4 years |
| Budget-impact of genomic testing in patients with suspected IBMFS-RD | Evaluation of budget-impact of genomic testing includes examining the financial and operational sustainability as well as scalability of offering genomic testing beyond the trial period. | 4 years |
| Health implementation analyses regarding the acceptability of genomic testing | The acceptability of comprehensive and centralised genomic testing in IBMFS-RD to patients is measured by a patient acceptability questionnaire which assesses patients' view and understanding of genomic testing. | 4 years |
| Populate Registry | To populate the Aplastic Anaemia and Other Bone Marrow Failure Syndromes Registry (AAR, Monash University) with consenting patients with IBMFS-RD to facilitate long-term follow up. | 4 years |
| ID | Term |
|---|---|
| D000080984 | Congenital Bone Marrow Failure Syndromes |
| D006402 | Hematologic Diseases |
| D000080983 | Bone Marrow Failure Disorders |
| D010198 | Pancytopenia |
| ID | Term |
|---|---|
| D001855 | Bone Marrow Diseases |
| D006425 | Hemic and Lymphatic Diseases |
| D007232 | Infant, Newborn, Diseases |
| D009358 | Congenital, Hereditary, and Neonatal Diseases and Abnormalities |
| D000095542 | Cytopenia |
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| ID | Term |
|---|---|
| D001483 | Base Sequence |
| ID | Term |
|---|---|
| D015394 | Molecular Structure |
| D001669 | Biochemical Phenomena |
| D055598 | Chemical Phenomena |
| D040342 | Genetic Structures |
| D055614 | Genetic Phenomena |
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