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| Name | Class |
|---|---|
| Clinique Saint Jean Ermitage | UNKNOWN |
| Nantes University Hospital | OTHER |
| Centre Hospitalier de Fontainebleau | UNKNOWN |
| Clinique du Mousseau |
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In the context of the COVID-19 pandemic, the role of the gut microbiome is yet unknown. The aim of this trial is to evaluate the clinical contribution of the gut microbiome composition and diversity on the disease severity and to estimate the viral load in stool samples.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| COVID-19 patients | Hospitalised COVID-19 patients |
| |
| Controls | Exposed medical staff |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| 1test1 | Diagnostic Test | Loss of bacterial diversity diagnosis |
|
| Measure | Description | Time Frame |
|---|---|---|
| Alpha-diversity | Alpha-diversity of the gut microbiota measured by 16S sequencing | at the time of inclusion in the study |
| Measure | Description | Time Frame |
|---|---|---|
| SARS-CoV-2 load | SARS-CoV-2 load in stool measured by RT-PCR | at the time of inclusion in the study |
| Microbiome composition | Genus level of the gut microbiota measured by 16S sequencing |
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Inclusion Criteria:
Exclusion Criteria:
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COVID-19 positive patients: hospitalised patients diagnosed with COVID-19 in one of the investigating sites, and able to provide a stool sample.
+ Control subjects: Medical and paramedical personnel working at one of the investigating sites, having been in direct contact with the patients.
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Centre Hospitalier Universitaire de Nantes | Nantes | Pays de la Loire Region | 44093 | France | ||
| Centre Hospitalier de Fontainebleau |
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| ID | Term |
|---|---|
| D000086382 | COVID-19 |
| ID | Term |
|---|---|
| D011024 | Pneumonia, Viral |
| D011014 | Pneumonia |
| D012141 | Respiratory Tract Infections |
| D007239 | Infections |
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| UNKNOWN |
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Stool
| at the time of inclusion in the study |
| Fontainebleau |
| Seine-et-Marne |
| 77300 |
| France |
| Clinique Saint Jean l'Ermitage | Melun | Seine-et-marne | 77000 | France |
| Clinique du Mousseau | Évry-Courcouronnes | Île-de-France Region | 91000 | France |
| D014777 |
| Virus Diseases |
| D018352 | Coronavirus Infections |
| D003333 | Coronaviridae Infections |
| D030341 | Nidovirales Infections |
| D012327 | RNA Virus Infections |
| D008171 | Lung Diseases |
| D012140 | Respiratory Tract Diseases |