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| ID | Type | Description | Link |
|---|---|---|---|
| 844763 | Other Identifier | University of Pennsylvania Perelman School of Medicine |
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Pharmacogenomics (PGx) is the study of how genes affect a person's response to drugs. PGx testing for certain genes can help predict the risk of side effects from chemotherapy agents. Testing is not regularly performed in clinical practice due to long wait times for results and challenges with integrating test results in the electronic health record. Investigators leading this study hope to find out if providing cancer care providers with the ability to order a PGx test and electronically receive results with dosing recommendations will increase the use of these tests to guide treatment decisions and improve patient outcomes.
This is a non-randomized implementation study, which means that all participants in this study will undergo genotyping for a pharmacogenetic test. The investigators will primarily measure the feasibility of using this test to guide cancer care.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| DPYD/UGT1A1 pharmacogenetic testing | Experimental | All patients will be screened for twelve single nucleotide polymorphisms (SNPs) in DPYD: DPYD*2A, *5, *6, *8, *9A, *10, *12, *13, rs2297595, rs115232898, rs67376798, HapB3. All patients will be screened for two SNPs in UGT1A1: UGT1A1*6, *28. |
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| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Pharmacogenetic test | Device | Patients with reduced function alleles (DPYD intermediate or poor metabolizer and/or UGT1A1 poor metabolizer) will be recommended to receive dose reductions per clinical pharmacogenetic guidelines. Patients that do not carry actionable alleles (DPYD normal metabolizer and/or UGT1A1 normal or intermediate metabolizer) will receive standard dosing. |
| Measure | Description | Time Frame |
|---|---|---|
| Feasibility: Number and Percentage of Participants Who Had Their Pharmacogenetic Tests Returned Prior to Initial Dose | The Number and percentage of participants who had their pharmacogenetic tests returned prior to the first determined dose of chemotherapy. | 14 days |
| Fidelity: Level of Agreement With Dose Recommendations | The number and percentage of participants with dose modifications made in agreement with the genotype-guided dosing recommendations for the first dose of chemotherapy. | 14 days |
| Penetrance: Proportion of Pharmacogenetic Tests Ordered by Providers | The number and percentage of participants with pharmacogenetic tests ordered compared to the number of patients eligible for testing at participating sites during the study timeframe | 14 days |
| Measure | Description | Time Frame |
|---|---|---|
| Severe Treatment Related Adverse Events (TRAE) | Percentage of patients experiencing a severe TRAE (an event requiring hospitalization, emergency room visits, or oncology evaluation center). Severe TRAEs were one of the outcomes measured by the study. | 6 months |
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Inclusion Criteria:
Exclusion Criteria:
Prior treatment with irinotecan
DPYD or UGT1A1 genotype already known
Severe renal or hepatic impairment (or unacceptable laboratory values), including:
Women who are pregnant or breast feeding, or subjects who refuse to use reliable contraceptive methods throughout the study
Treating physician does not want subject to participate
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| Name | Affiliation | Role |
|---|---|---|
| Sony Tuteja, PharmD, MS | University of Pennsylvania | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Lancaster General Hospital | Lancaster | Pennsylvania | 17604 | United States | ||
| Penn Presbyterian Medical Center |
| PubMed Identifier | Type | Citation | Retractions |
|---|---|---|---|
| 35865463 | Derived | Varughese LA, Bhupathiraju M, Hoffecker G, Terek S, Harr M, Hakonarson H, Cambareri C, Marini J, Landgraf J, Chen J, Kanter G, Lau-Min KS, Massa RC, Damjanov N, Reddy NJ, Oyer RA, Teitelbaum UR, Tuteja S. Implementing Pharmacogenetic Testing in Gastrointestinal Cancers (IMPACT-GI): Study Protocol for a Pragmatic Implementation Trial for Establishing DPYD and UGT1A1 Screening to Guide Chemotherapy Dosing. Front Oncol. 2022 Jul 5;12:859846. doi: 10.3389/fonc.2022.859846. eCollection 2022. |
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Data will be made available upon reasonable request.
Study protocol, SAP, ICF will be made available 1 year following enrollment of the last participant. IPD will be made available 6 months after publication of study results.
Contact PI, Sony Tuteja, PharmD, sonyt@pennmedicine.upenn.edu with individual requests.
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Of the 552 enrolled participants, 531 were eligible to begin study procedures.
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| ID | Title | Description |
|---|---|---|
| FG000 | Prospective Cohort | Enrollees were given DPYD and UGT1A1 testing before starting chemotherapy |
| FG001 | Confirmatory Cohort | Enrollees were given DPYD and UGT1A1 testing after starting chemotherapy at physician's request |
| FG002 | BioBank Control | Enrollees with biobank samples were tested for DPYD and UGT1A1 variants, and retrospectively chart reviewed for outcomes |
| Title | Milestones | Reasons Not Completed | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Overall Study |
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| ID | Title | Description |
|---|---|---|
| BG000 | Prospective Cohort | Enrollees were given DPYD and UGT1A1 testing before starting chemotherapy |
| BG001 | Confirmatory Cohort | Enrollees were given DPYD and UGT1A1 testing after starting chemotherapy at physician's request |
| Units | Counts |
|---|---|
| Participants |
|
| Title | Description | Population Description | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Denominator Units Selected | Denominators | Classes |
|---|---|---|---|---|---|---|---|---|---|
| Age, Categorical | Count of Participants |
| Type | Title | Description | Population Description | Reporting Status | Anticipated Posting Date | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Time Frame | Units Analyzed | Denominator Units Selected | Arm/Group Information | Denominators | Classes | Analyses | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Primary | Feasibility: Number and Percentage of Participants Who Had Their Pharmacogenetic Tests Returned Prior to Initial Dose | The Number and percentage of participants who had their pharmacogenetic tests returned prior to the first determined dose of chemotherapy. | Number and percentage of participants with both PGx test results and who began a qualifying chemotherapy. The BioBank Cohort and Confirmatory Cohort are not included in this measure as their PGx testing was intentionally ordered after their first dose of chemotherapy, therefore how many results were returned prior to first dose was not applicable. | Posted | Count of Participants | Participants | 14 days |
|
Adverse event data was collected during the first six cycles of chemotherapy, <6 months.
Severe adverse events were defined as any related event requiring hospitalization, emergency room visits, oncology evaluation center care, or death. Other adverse events are all other adverse events that were collected that did not meet the serious criteria. Events were primarily assessed through medical records review.
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| ID | Title | Description | Deaths (Affected) | Deaths (At Risk) | Serious Events (Affected) | Serious Events (At Risk) | Other Events (Affected) | Other Events (At Risk) |
|---|---|---|---|---|---|---|---|---|
| EG000 | Prospective Cohort | Enrollees were given DPYD and UGT1A1 testing before starting chemotherapy |
| Term | Organ System | Source Vocabulary | Assessment Type | Notes | Statistical Information |
|---|---|---|---|---|---|
| Neutropenia | Blood and lymphatic system disorders | Non-systematic Assessment |
| Term | Organ System | Source Vocabulary | Assessment Type | Notes | Statistical Information |
|---|---|---|---|---|---|
| Neutropenia | Blood and lymphatic system disorders | Non-systematic Assessment |
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| Title | Organization | Phone | Extension | |
|---|---|---|---|---|
| Sony Tuteja, PI | University of Pennsylvania | 215-573-7834 | Sony.Tuteja@PennMedicine.upenn.edu |
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| Type | Includes Protocol | Includes SAP | Includes ICF | Document Label | Document Date | Document Uploaded Date | Document File Name |
|---|---|---|---|---|---|---|---|
| Prot_SAP | Yes | Yes | No | Study Protocol and Statistical Analysis Plan | May 16, 2024 | Sep 10, 2024 | Prot_SAP_001.pdf |
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| ID | Term |
|---|---|
| D005770 | Gastrointestinal Neoplasms |
| ID | Term |
|---|---|
| D004067 | Digestive System Neoplasms |
| D009371 | Neoplasms by Site |
| D009369 | Neoplasms |
| D004066 | Digestive System Diseases |
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This is a nonrandomized, open-label study to investigate the feasibility of establishing and integrating a pharmacogenetic test into clinical oncology care. A historical control group of patients with gastrointestinal cancers enrolled in a biobank will be used to compare toxicity outcomes of the prospectively-genotyped patients.
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|
| Philadelphia |
| Pennsylvania |
| 19104 |
| United States |
| University of Pennsylvania | Philadelphia | Pennsylvania | 19104 | United States |
| Protocol Violation |
|
| BG002 | BioBank Cohort | Enrollees with biobank samples were tested for DPYD and UGT1A1 variants, and retrospectively chart reviewed for outcomes |
| BG003 | Total | Total of all reporting groups |
| Participants |
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| Sex: Female, Male | Count of Participants | Participants |
|
| Ethnicity (NIH/OMB) | Count of Participants | Participants |
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| Race (NIH/OMB) | Count of Participants | Participants |
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| Region of Enrollment | Number | participants |
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| ECOG at Enrollment | ECOG Performance Status from chart 0 Fully active, able to carry on all pre-disease performance without restriction
| Count of Participants | Participants |
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| Units | Counts |
|---|---|
| Participants |
|
|
| Primary | Fidelity: Level of Agreement With Dose Recommendations | The number and percentage of participants with dose modifications made in agreement with the genotype-guided dosing recommendations for the first dose of chemotherapy. | Number and percentage of participants with an actionable genetic variant also receiving an interacting chemotherapy (DPYD Poor and Intermediate Metabolizers receiving fluoropyrimidine and UGT1A1 Poor Metabolizers receiving irinotecan). The BioBank Cohort and Confirmatory Cohort are not included in this measure as their PGx testing was intentionally ordered after their first dose of chemotherapy, therefore modifying their chemotherapy to match PGx results was not applicable. | Posted | Count of Participants | Participants | 14 days |
|
|
|
| Primary | Penetrance: Proportion of Pharmacogenetic Tests Ordered by Providers | The number and percentage of participants with pharmacogenetic tests ordered compared to the number of patients eligible for testing at participating sites during the study timeframe | In order to calculate the penetrance of the intervention, as this was an implementation trial, it is necessary to consider the total number of patients who would have been eligible for recruitment. This includes both the prospective arms, as well as individuals in participating clinics during the study timeframe who were not approached for consent due to personnel and screening limitations. | Posted | Count of Participants | Participants | 14 days |
|
|
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| Secondary | Severe Treatment Related Adverse Events (TRAE) | Percentage of patients experiencing a severe TRAE (an event requiring hospitalization, emergency room visits, or oncology evaluation center). Severe TRAEs were one of the outcomes measured by the study. | Prospective and BioBank Cohorts are broken out into DGI and Non-DGI groups to compare participant outcomes by genotype. | Posted | Count of Participants | Participants | 6 months |
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| 35 |
| 225 |
| 69 |
| 225 |
| 214 |
| 225 |
| EG001 | Confirmatory Cohort | Enrollees were given DPYD and UGT1A1 testing after starting chemotherapy at physician's request | 3 | 20 | 10 | 20 | 20 | 20 |
| EG002 | BioBank Cohort | Enrollees with biobank samples were tested for DPYD and UGT1A1 variants, and retrospectively chart reviewed for outcomes | 47 | 229 | 76 | 229 | 140 | 229 |
| Diarrhea | Gastrointestinal disorders | Non-systematic Assessment |
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| Vomiting | Gastrointestinal disorders | Non-systematic Assessment |
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| Weakness | General disorders | Non-systematic Assessment | Not specifically assessed in the BioBank cohort, see other |
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| Sepsis | Infections and infestations | Non-systematic Assessment |
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| Fever | General disorders | Non-systematic Assessment |
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| Thrombosis | Blood and lymphatic system disorders | Non-systematic Assessment | Not specifically assessed in the BioBank cohort, see other |
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| Pain | General disorders | Non-systematic Assessment |
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| Dehydration | Metabolism and nutrition disorders | Non-systematic Assessment | Not specifically assessed in the BioBank cohort, see other |
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| Other | General disorders | Non-systematic Assessment |
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| Nausea | Gastrointestinal disorders | Non-systematic Assessment |
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| Thrombocytopenia | Blood and lymphatic system disorders | Non-systematic Assessment |
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| Anemia | Blood and lymphatic system disorders | Non-systematic Assessment |
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| Diarrhea | Gastrointestinal disorders | Non-systematic Assessment |
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| Nausea | Gastrointestinal disorders | Non-systematic Assessment |
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| Vomiting | Gastrointestinal disorders | Non-systematic Assessment |
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| Mucositis | Gastrointestinal disorders | Non-systematic Assessment |
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| Hand Foot Syndrome | Skin and subcutaneous tissue disorders | Non-systematic Assessment |
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| Heart Palpitations | Cardiac disorders | Non-systematic Assessment |
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| Dyspnea | Respiratory, thoracic and mediastinal disorders | Non-systematic Assessment |
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| Peripheral Neuropathy | Nervous system disorders | Non-systematic Assessment |
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| Chest Pain | Cardiac disorders | Non-systematic Assessment |
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| Febrile Neutropenia | Blood and lymphatic system disorders | Non-systematic Assessment |
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| D005767 |
| Gastrointestinal Diseases |
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| Number and percent of participants with UGT1A1 dose mods in agreement to genotype-recommendations |
|
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| Treatment Modifications |
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| Treatment Discontinuation |
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| .025 |
| Superiority |