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Interim futility analyses identified a lack of SYNB1020 efficacy.
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This Phase 1b/2a, randomized, double-blind, placebo-controlled study was designed to evaluate the safety, tolerability, and pharmacodynamics of SYNB1020 in hepatic insufficiency and cirrhosis patients with hyperammonemia, with dosing of the investigational medicinal product (IMP) administered in an inpatient unit and subsequent outpatient follow-up for SYNB1020 clearance in two study parts.
In Part 1, a sentinel open-label cohort of subjects with cirrhosis and Model for End-Stage Liver Disease (MELD) score <12 was admitted to an inpatient facility for a run-in diet, baseline assessments, IMP administration, safety monitoring, and collection of blood, urine, and stool samples for evaluation of safety, tolerability, and pharmacokinetic (PK) and pharmacodynamic (PD) evaluations. Subjects in Part 1 were enrolled sequentially to receive SYNB1020. Once the safety and tolerability were established in Part 1, enrollment was opened to subjects in Part 2.
Part 2 comprised a randomized, double-blind, placebo-controlled study in subjects with cirrhosis and hyperammonemia. Subjects were permitted to be pre-screened for eligibility based on medical history and a single fasting spot venous ammonia measurement. Eligible subjects with elevated fasting spot venous ammonia then underwent full screening within 7 days of pre-screening. Eligible subjects were admitted to an inpatient facility for a run-in diet and 24-hour ammonia profile, and those with an elevated 24-hour ammonia area under the curve (AUC) (>1.2 × the upper limit of normal [ULN]) proceeded with computer-generated randomization in a 1:1 ratio to receive either SYNB1020 or matching placebo. Randomization was followed by IMP administration, safety monitoring, and collection of blood, urine, and stool samples for PK and PD evaluations.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Part 1: SYNB1020 | Experimental | Part 1 comprised a sentinel open-label cohort of subjects enrolled sequentially to receive SYNB1020, which was administered orally at a dose of 5 × 10^11 colony-forming units (CFU) 3 times daily (TID) given immediately after meals from Days 1 through 6. |
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| Part 2: SYNB1020 | Experimental | Subjects randomized to receive SYNB1020 in Part 2 received SYNB1020 administered orally at a dose of 5 × 10^11 CFU TID given immediately after meals from Days 1 through 6. |
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| Part 2: Placebo | Placebo Comparator | Subjects randomized to receive control in Part 2 received matching placebo (100 mL masking solution) administered orally TID given immediately after meals from Days 1 through 6. |
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| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| SYNB1020 | Drug | SYNB1020 was supplied at a concentration of approximately 1 × 10^11 CFU/mL in a buffered solution in 5 mL cryovials with a nominal 5 mL fill volume, administered with 100 mL of masking buffer solution. |
| Measure | Description | Time Frame |
|---|---|---|
| Number of Participants With Treatment-Emergent Adverse Events | Toxicity was graded in accordance with the National Cancer Institute (NCI) Common Terminology Criteria for Adverse Events (CTCAE), version 4.03, as follows: Grade 1 (mild/asymptomatic; no intervention); Grade 2 (moderate; minimal intervention); Grade 3 (severe/medically significant; hospitalization indicated; disabling); Grade 4 (life-threatening; urgent intervention required). Adverse events (AEs) were reported based on clinical laboratory tests, vital sign and weight measurements, physical examinations, and any other medically indicated assessments, including subject interviews, from the time informed consent was signed through the end of the safety follow-up period. AEs were considered to be treatment emergent adverse events (TEAEs) if they occurred or worsened in severity after the first dose of study treatment. TEAEs were considered treatment-related if relationship to study drug was possibly related, probably related, definitely related, or a missing relationship. | Up to 70 days |
| Measure | Description | Time Frame |
|---|---|---|
| Number of Participants With Clearance of SYNB1020 From Feces | SYNB1020 transit through the gastrointestinal tract was measured with qualitative and quantitative polymerase chain reaction (PCR) fecal assays from fecal samples collected at baseline, daily during the dosing period (Days 1 through 6), at the time of discharge from the inpatient unit (Day 7), and at follow-up visits beginning 7±1 days after the last dose and continuing biweekly until a subject had a negative SYNB1020 fecal test. SYNB1020 clearance reflects a test value of below the limit of quantitation (BLQ) occurring after the indicated number of days following the last dose of study treatment. |
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Key Inclusion Criteria:
Key Exclusion Criteria:
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Southern California Research Center | Coronado | California | 92118 | United States | ||
| Inland Empire Liver Foundation |
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| ID | Title | Description |
|---|---|---|
| FG000 | Part 1: SYNB1020 | Part 1 comprised a sentinel open-label cohort of subjects enrolled sequentially to receive SYNB1020, which was administered orally at a dose of 5 × 10^11 colony-forming units (CFU) 3 times daily (TID) given immediately after meals from Days 1 through 6. |
| FG001 | Part 2: SYNB1020 | Subjects randomized to receive SYNB1020 in Part 2 received SYNB1020 administered orally at a dose of 5 × 10^11 CFU TID given immediately after meals from Days 1 through 6. |
| FG002 | Part 2: Placebo | Subjects randomized to receive control in Part 2 received matching placebo (100 mL masking solution) administered orally TID given immediately after meals from Days 1 through 6. |
| Title | Milestones | Reasons Not Completed | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Overall Study |
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|
All subjects who received at least 1 dose of study treatment
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| ID | Title | Description |
|---|---|---|
| BG000 | Part 1: SYNB1020 | Part 1 comprised a sentinel open-label cohort of subjects enrolled sequentially to receive SYNB1020, which was administered orally at a dose of 5 × 10^11 CFU TID given immediately after meals from Days 1 through 6. |
| BG001 | Part 2: SYNB1020 |
| Units | Counts |
|---|---|
| Participants |
|
| Title | Description | Population Description | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Denominator Units Selected | Denominators | Classes |
|---|---|---|---|---|---|---|---|---|---|
| Age, Continuous | Median |
| Type | Title | Description | Population Description | Reporting Status | Anticipated Posting Date | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Time Frame | Units Analyzed | Denominator Units Selected | Arm/Group Information | Denominators | Classes | Analyses |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Primary | Number of Participants With Treatment-Emergent Adverse Events | Toxicity was graded in accordance with the National Cancer Institute (NCI) Common Terminology Criteria for Adverse Events (CTCAE), version 4.03, as follows: Grade 1 (mild/asymptomatic; no intervention); Grade 2 (moderate; minimal intervention); Grade 3 (severe/medically significant; hospitalization indicated; disabling); Grade 4 (life-threatening; urgent intervention required). Adverse events (AEs) were reported based on clinical laboratory tests, vital sign and weight measurements, physical examinations, and any other medically indicated assessments, including subject interviews, from the time informed consent was signed through the end of the safety follow-up period. AEs were considered to be treatment emergent adverse events (TEAEs) if they occurred or worsened in severity after the first dose of study treatment. TEAEs were considered treatment-related if relationship to study drug was possibly related, probably related, definitely related, or a missing relationship. | All subjects who received at least 1 dose of SYNB1020 or placebo | Posted | Number | participants | Up to 70 days |
|
All AEs occurring from the time a subject signs informed consent through the safety follow-up period (i.e.,up to 70 days) were documented, regardless of the causal relationship to study drug. AEs that occurred or worsened in severity after the first dose of study treatment were considered treatment emergent (i.e., TEAEs).
AE documentation included duration (onset and resolution dates), severity using the NCI CTCAE (version 4.03), assessment of causality, seriousness, and whether specific action or therapy was required. In summaries, preferred terms are counted only once per subject at the maximum reported grade.
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| ID | Title | Description | Deaths (Affected) | Deaths (At Risk) | Serious Events (Affected) | Serious Events (At Risk) | Other Events (Affected) | Other Events (At Risk) |
|---|---|---|---|---|---|---|---|---|
| EG000 | Part 1: SYNB1020 | Part 1 comprised a sentinel open-label cohort of subjects enrolled sequentially to receive SYNB1020, which was administered orally at a dose of 5 × 10^11 CFU TID given immediately after meals from Days 1 through 6. |
| Term | Organ System | Source Vocabulary | Assessment Type | Notes | Statistical Information |
|---|---|---|---|---|---|
| Oesophageal varices haemorrhage | Gastrointestinal disorders | MedDRA (20.1) | Systematic Assessment | Severity Grade 3 |
| Term | Organ System | Source Vocabulary | Assessment Type | Notes | Statistical Information |
|---|---|---|---|---|---|
| Constipation | Gastrointestinal disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 1 |
Interim futility analyses identified a lack of SYNB1020 efficacy (plasma ammonia AUC) compared with placebo, resulting in study termination.
| Title | Organization | Phone | Extension | |
|---|---|---|---|---|
| Andrew Marsh, Head Clinical Operations | Synlogic | 617-401-9975 | 9135 | andrew.marsh@synlogictx.com |
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| Type | Includes Protocol | Includes SAP | Includes ICF | Document Label | Document Date | Document Uploaded Date | Document File Name |
|---|---|---|---|---|---|---|---|
| Prot | Yes | No | No | Study Protocol | Nov 27, 2018 | Aug 18, 2020 | Prot_001.pdf |
| SAP | No | Yes | No | Statistical Analysis Plan | Apr 1, 2019 | Aug 18, 2020 | SAP_000.pdf |
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| ID | Term |
|---|---|
| D005355 | Fibrosis |
| ID | Term |
|---|---|
| D010335 | Pathologic Processes |
| D013568 | Pathological Conditions, Signs and Symptoms |
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Part 1 was open-label; Part 2 was double-blinded
| Placebo | Other | Subjects received placebo orally in a chilled buffered solution (100 mL). |
|
| Up to 65 days |
| Daily Fasting Spot Venous Ammonia | Fasting spot venous ammonia was collected at baseline (Day -2) and at the time of discharge from the inpatient unit (Day 7). | Up to 9 days |
| Rialto |
| California |
| 92377 |
| United States |
| Medical University of South Carolina | Charleston | South Carolina | 29425 | United States |
| Texas Liver Institute | San Antonio | Texas | 78006 | United States |
| McGuire VA Medical Center | Richmond | Virginia | 23249 | United States |
Subjects randomized to receive SYNB1020 in Part 2 received SYNB1020 administered orally at a dose of 5 × 10^11 CFU TID given immediately after meals from Days 1 through 6. |
| BG002 | Part 2: Placebo | Subjects randomized to receive control in Part 2 received matching placebo (100 mL masking solution) administered orally TID given immediately after meals from Days 1 through 6. |
| BG003 | Total | Total of all reporting groups |
| years |
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| Sex: Female, Male | Count of Participants | Participants |
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| Ethnicity (NIH/OMB) | Count of Participants | Participants |
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| Race (NIH/OMB) | Count of Participants | Participants |
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| Region of Enrollment | Number | participants |
|
| Title |
|---|
| Description |
|---|
| OG000 | Part 1: SYNB1020 | Part 1 comprised a sentinel open-label cohort of subjects enrolled sequentially to receive SYNB1020, which was administered orally at a dose of 5 × 10^11 CFU TID given immediately after meals from Days 1 through 6. |
| OG001 | Part 2: SYNB1020 | Subjects randomized to receive SYNB1020 in Part 2 received SYNB1020 administered orally at a dose of 5 × 10^11 CFU TID given immediately after meals from Days 1 through 6. |
| OG002 | Part 2: Placebo | Subjects randomized to receive control in Part 2 received matching placebo (100 mL masking solution) administered orally TID given immediately after meals from Days 1 through 6. |
|
|
| Secondary | Number of Participants With Clearance of SYNB1020 From Feces | SYNB1020 transit through the gastrointestinal tract was measured with qualitative and quantitative polymerase chain reaction (PCR) fecal assays from fecal samples collected at baseline, daily during the dosing period (Days 1 through 6), at the time of discharge from the inpatient unit (Day 7), and at follow-up visits beginning 7±1 days after the last dose and continuing biweekly until a subject had a negative SYNB1020 fecal test. SYNB1020 clearance reflects a test value of below the limit of quantitation (BLQ) occurring after the indicated number of days following the last dose of study treatment. | All subjects who received at least 1 dose of SYNB1020 or placebo | Posted | Count of Participants | Participants | Up to 65 days |
|
|
|
| Secondary | Daily Fasting Spot Venous Ammonia | Fasting spot venous ammonia was collected at baseline (Day -2) and at the time of discharge from the inpatient unit (Day 7). | All subjects who received at least 1 dose of SYNB1020 or placebo, completed the study, and were considered evaluable for analysis of pharmacodynamic data | Posted | Mean | Standard Deviation | μmol/L | Up to 9 days |
|
|
|
| 0 |
| 6 |
| 0 |
| 6 |
| 4 |
| 6 |
| EG001 | Part 2: SYNB1020 | Subjects randomized to receive SYNB1020 in Part 2 received SYNB1020 administered orally at a dose of 5 × 10^11 CFU TID given immediately after meals from Days 1 through 6. | 0 | 9 | 0 | 9 | 8 | 9 |
| EG002 | Part 2: Placebo | Subjects randomized to receive control in Part 2 received matching placebo (100 mL masking solution) administered orally TID given immediately after meals from Days 1 through 6. | 0 | 8 | 1 | 8 | 3 | 8 |
|
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| Nausea | Gastrointestinal disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Vomiting | Gastrointestinal disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Diarrhoea | Gastrointestinal disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Abdominal pain | Gastrointestinal disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
|
| Abdominal pain upper | Gastrointestinal disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Eructation | Gastrointestinal disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 1 |
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| Dizziness | Nervous system disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Headache | Nervous system disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Hepatic encephalopathy | Nervous system disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Tremor | Nervous system disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 1 |
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| Nasopharyngitis | Infections and infestations | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 1 |
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| Upper respiratory tract infection | Infections and infestations | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 1 |
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| Urinary tract infection | Infections and infestations | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Dehydration | Metabolism and nutrition disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Limb injury | Injury, poisoning and procedural complications | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Post-traumatic pain | Injury, poisoning and procedural complications | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 2 |
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| Insomnia | Psychiatric disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 1 |
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| Rash | Skin and subcutaneous tissue disorders | MedDRA (20.1) | Systematic Assessment | Maximum severity Grade 1 |
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