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A prospective observational study. Enrolled participants admitted to ICU due to pneumonia and respiratory failure need mechanical ventilator support. Investigators collected the residual specimens, such as sputum from endotrachea aspiration, bronchoalveolar lavage fluid in those participants as the usual care in the ICU. Those residual samples were sent to extract RNA and sequence by using high-throughput sequencing (next-generation sequencing) method.
Investigators will compared the microbiome feature between lower respiratory tract and stool specimens in those participants diagnosed as pneumonia with respiratory failure.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Pneumonia patient with respiratory failure | Sputum and stool sampling day 1, 3 and 7 after enrolling into study |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| 16s RNA sequence of sputum, bronchoalveolar lavage fluid (options), stool | Diagnostic Test | We will check the microbiome in lower respiratory samples (sputum and bronchoalveolar lavage fluid) and stool by using 16S RNA sequencing |
| Measure | Description | Time Frame |
|---|---|---|
| The dynamics of the airway bacterial microbiome in the lower respiratory tract specimens in the setting of pneumonia accompanied by respiratory failure at the onset of, and day 3 and day 7 (or before extubation) | Uses high-throughput sequencing (next-generation sequencing) to sequence the 16S rRNA sequence of bacteria in residual samples | Compared the dynamic change of mirobiome at the baseline (onset of respiratory failure within 48 hours)m day 3 and day 7 |
| Measure | Description | Time Frame |
|---|---|---|
| The dynamics of the gut bacterial microbiome in the stool specimens in the setting of pneumonia accompanied by respiratory failure at the onset of, and day 3 and day 7 (or before extubation) | uses high-throughput sequencing (next-generation sequencing) to sequence the 16S | Compared the dynamic change of mirobiome at the baseline (onset of respiratory failure within 48 hours)m day 3 and day 7 |
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Inclusion Criteria:
Exclusion Criteria:
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Patients who suffered from pneumonia and respiratory failure needed mechanical ventilator support with inform consent will be enrolled into study
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| Name | Affiliation | Role |
|---|---|---|
| Pin-Kuei Fu, MD, PhD | Taichung Veterans General Hospital | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Taichung Veterans General Hospital | Taichung | 40705 | Taiwan |
We will share study protocol and Informed Consent Form and Clinical Study Report to other researchers
One year after the study was completed
E-mail to yetquen@gmail.com Dr. Pin-Kuei Fu
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Blood sample obtained for cytokines detection
| The association of the microbiome between lower respiratory tracts and stool specimens in pneumonic patient with respiratory failure | Uses high-throughput sequencing (next-generation sequencing) to sequence the 16S | Compared the association of mirobiome at the baseline (onset of respiratory failure within 48 hours)m day 3 and day 7 |
| ID | Term |
|---|---|
| D018410 | Pneumonia, Bacterial |
| D012131 | Respiratory Insufficiency |
| D011014 | Pneumonia |
| ID | Term |
|---|---|
| D001424 | Bacterial Infections |
| D001423 | Bacterial Infections and Mycoses |
| D007239 | Infections |
| D012141 | Respiratory Tract Infections |
| D008171 | Lung Diseases |
| D012140 | Respiratory Tract Diseases |
| D012120 | Respiration Disorders |
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| ID | Term |
|---|---|
| D003672 | Defecation |
| ID | Term |
|---|---|
| D004068 | Digestive System Physiological Phenomena |
| D055688 | Digestive System and Oral Physiological Phenomena |
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