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The aim of this study is to look for predisposing mutations in patients and relatives affected by AML and MDS with familial history of myeloid or, less frequently, lymphoid malignancies. Taking advantage of a next generation sequencing (NGS) platform, screening for known and unknown mutations potentially associated with the disease will be done. The screening will be performed on affected and unaffected family members, in order to outline new pedigrees that either validate previous findings or constitute novel discoveries.
Patients with a diagnosis of AML or MDS with at least one relative affected by AL/MDS or, secondly, lymphoproliferative disorders, will be enrolled into the study, and will be referred to as the index case. The analysis will be performed both retrospectively and prospectively. A gene panel deep sequencing (GPDS) of the tumor DNA from peripheral blood of the index case at diagnosis will be performed in order to identify mutations in a number of genes known to be associated to myeloid malignancies, mainly: ASXL1, BCOR, NRAS, TP53, RUNX1, CEBPA, FLT3, EZH2, IDH1, IDH2, NPM1, DNMT3A, TET2, CBL, KRAS, ETV6, SF3B1, SRSF2, U2AF1, ZRSR2, GATA2, TERT, TERC, SRP72, and ANKRD26.
In case none of the known mutations is found by the GPDS, whole exome sequencing (WES) will be performed as second step on the tumor cells of the index case.
When one or multiple somatic mutations are found, a Sanger Sequencing (SS) on germline DNA from epithelial buccal cells of the index cases and affected relatives will be performed for the screening of the same somatic leukemic mutations on germline DNA. If the index case and affected relatives share the same mutations on the germline, the same germline mutations will be checked by SS in the unaffected family members.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Analysis with molecular biology | Any patient with acute leukemia or other myeloid malignancy AND
|
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Analysis with molecular biology | Genetic | Molecular screening by next generation sequencing (NGS) platform, for known and unknown mutations potentially associated with the disease |
| Measure | Description | Time Frame |
|---|---|---|
| Discovery of predisposing mutations | Screening of tumor and germline DNA for predisposing mutations | After enrollment of the first 10 cases (an avarage of 2 years) |
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Inclusion criteria:
Any patient with acute myeloid leukemia (AML) or Myelodisplastic Syndrome (MDS) with:
a first- or second-degree relative with Acute leukemia or MDS or other myeloid malignancies
a first- or second-degree relative with Lymphoproliferative neoplasms
or with clinical features that resemble one of the familial MDS/AML predisposition syndromes:
Exclusion Criteria:
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Detailed personal and family history from every patient affected by myeloid malignancy will be obtained, in order to identify patients with at least one relative affected by myeloid malignancy or lymphoproliferative disorders or with the features that increase the likelihood of one of the aforementioned familial myeloid malignancy predisposition syndromes
| Name | Role | Phone | Extension | |
|---|---|---|---|---|
| Domenico Russo, MD | Contact | 0039303996811 | domenico.russo@unibs.it | |
| Francesca Schieppati, MD | Contact | 0039303996811 | fschieppati@gmail.com |
| Name | Affiliation | Role |
|---|---|---|
| Domenico Russo, MD | Chair of Hematology | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Chair of Hematology and Bone marrow Transplant Unit | Recruiting | Brescia | 25123 | Italy |
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| ID | Term |
|---|---|
| D007938 | Leukemia |
| ID | Term |
|---|---|
| D009370 | Neoplasms by Histologic Type |
| D009369 | Neoplasms |
| D006402 | Hematologic Diseases |
| D006425 | Hemic and Lymphatic Diseases |
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Tumor DNA of index case will be extracted from 10 ml of PB collected at diagnosis in EDTA tubes. Mononuclear cells from PB (PBMC)will be separated and isolated by Ficoll gradient. Tumor DNA will be extracted possibly soon after the isolation. Tumor DNA of affected relative/-s will be extracted from PBMC isolated at diagnosis, or during the patients monitoring, and stored at -80°C. Tumor DNA previously extracted and stored at -20°C may be used in event of no PB or bone marrow sample available.
Germline DNA of index case and relatives will be extracted by buccal epithelial cells isolated by Isohelix SK-2 DNA Buccal Swab Collection Kit by Therapak Corporation, Isohelix SK-2 DNA Buccal Swab Collection Kit.