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The primary purpose of this clinical investigation is to verify the performance of the GenePOC GBS Assay on the GenePOC Instrument. This will be achieved by comparing the Assay to the a Culture, a conventional method for detection of Streptococcus agalactiae in vaginal/rectal swab specimens from antepartum women.
The GenePOC GBS Test performed on the GenePOC System is a qualitative in vitro diagnostic (IVD) test designed to detect Group B Streptococcus (GBS) DNA from vaginal/rectal swabs from antepartum women following enrichment in Lim broth for 18-24 hours.
The GenePOC GBS Test utilizes automated sample preparation and real-time polymerase chain reaction (PCR) to detect a cfb gene sequence specific to the Streptococcus agalactiae genome. The GenePOC GBS Test is indicated for the identification of antepartum GBS colonization and does not provide susceptibility results. Culture isolates are needed for performing susceptibility testing as recommended for penicillin-allergic women.
The GenePOC GBS is an IVD system is comprised of the GenePOC Diagnostics System and the GenePOC Group B Step [GBS] Test, the components of which are:
The GenePOC Instrument is fully automated and integrates sample lysis, dilution, amplification and detection of the target sequence in complex samples using real-time Polymerase chain reaction (rtPCR). User intervention is only required for discharging the patient sample into the SBT (sample Buffer Tube), transferring the sample into the PIE and for loading/unloading the PIEs into the instrument. The GenePOC instrument consists of a rotor to spin the PIEs, temperature control, fluorescence detection, a tactile user-friendly interface, two barcode readers, and integrated firmware and software to deliver results to the user. The PIE is a closed system that prevents the risk of contamination.
Lim Broth is used for the selective enrichment of group B streptococci (Streptococcus agalactiae). An aliquot of the broth is mixed with GenePOC Sample Buffer Tube Reagent (SBT), after which a sample is transferred to the GenePOC GBS PIE. The GenePOC GBS PIE is then automatically processed by the GenePOC Instrument.
On completion of a run, the user removes the processed PIEs from the instrument and discards them according to local biological waste management procedures.
One GenePOC instrument per site will be allocated. The purpose of the clinical investigation is to enroll sufficient specimens from four (4) Clinical Centers to obtain a total of 150 specimens positive for GBS based on the Reference Method final result.
Subject Informed consent is not required for this clinical trial as the testing will be performed on excess de-identified specimens only.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Accuracy Testing | Experimental | Comparison between GenePOC PCR and Reference Method |
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| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Comparison between GenePOC PCR and Reference Method | Device | Antepartum women swab specimen incubated in Lim Broth will be tested with the GenePOC GBS test on the GenePOC Instrument. The results will be compared to Reference Method defined as incubated Lim broth subcultured onto blood agar plate for observation of a Streptococcus agalactiae strain. |
| Measure | Description | Time Frame |
|---|---|---|
| Performance Characteristics | To establish the performance characteristics of the GenePOC GBS System for its use in determining the presence of GBS in vaginal/rectal swab, after Lim Broth enrichment, specimens from antepartum pregnant women. Sensitivity and specificity will be established in comparison to the Reference Method. Sensitivity performance results from the comparison of specimens being reported as positive by both method against the total number of specimen reported as positive on the Reference Method only. Sensitivity is reported as a percentage (i.e. concondant positives / concordant positive + discordant positive ([False Negative]). Specificity performance results from the comparison of specimens being reported as negative by both method against the total number of specimen reported as negative on the Reference Method only. Specificity is reported as a percentage (i.e. concondant negatives / concordant negatives + discordant negatives ([False Positive]). | At the time of the results with Reference Method is confirmed, up to 6 months |
| Measure | Description | Time Frame |
|---|---|---|
| Positive and Negative Predictive Values | To estimate the Positive and Negative Predictive Values (PPV and NPV) of the GenePOC GBS System. PPV results from the comparison of specimens being reported as positive by both method against the total number of specimen reported as positive on the Investigational test only. PPV is reported as a percentage (i.e. concondant positives / concordant positive + discordant positive ([False Positive]). NPV results from the comparison of specimens being reported as negative by both method against the total number of specimen reported as negative on the Investigational test only. NPV is reported as a percentage (i.e. concondant negatives / concordant negatives + discordant negatives ([False Negative]). |
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Inclusion Criteria:
Antepartum pregnant women
18 years old and more
Being at a gestation period of 35 to 37 weeks.
Vaginal/rectal swab specimen
Transport and storage times, and conditions (e.g. room temperature and/or refrigerated) within the labeled indications.
The GenePOC GBS System and the Reference Method will be performed according to the GenePOC GBS Investigation Documents.
Materials use within their expiration date
Exclusion Criteria:
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| Name | Affiliation | Role |
|---|---|---|
| Patrice Allibert | Meridian Bioscience, Inc. | Study Director |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Detroit Medical Center University Laboratories | Detroit | Michigan | 48201 | United States | ||
| Tricore Laboratory University of New Mexico |
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| ID | Title | Description |
|---|---|---|
| FG000 | Accuracy Testing | Comparison between GenePOC PCR and Reference Method Comparison between GenePOC PCR and Reference Method: Antepartum women swab specimen incubated in Lim Broth will be tested with the GenePOC GBS test on the GenePOC Instrument. The results will be compared to Reference Method defined as incubated Lim broth subcultured onto blood agar plate for observation of a Streptococcus agalactiae strain. |
| Title | Milestones | Reasons Not Completed | |||||
|---|---|---|---|---|---|---|---|
| Overall Study |
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| Type | Includes Protocol | Includes SAP | Includes ICF | Document Label | Document Date | Document Uploaded Date | Document File Name |
|---|---|---|---|---|---|---|---|
| Prot_SAP | Yes | Yes | No | Study Protocol and Statistical Analysis Plan | Jan 5, 2017 |
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| At the time of the results with Reference Method is confirmed, up to 6 months |
| Unresolved Sample Results | To estimate the rate of unresolved results for the GenePOC GBS System due to Sample Processing control failure (unresolved sample results). | At the time of the results with Reference Method is confirmed, up to 6 months |
| Indeterminate Sample Results | To estimate the rate of indeterminate results for the GenePOC GBS Test due to an Instrument failure (indeterminate sample results). | At the time of the results with Reference Method is confirmed, up to 6 months |
| Albuquerque |
| New Mexico |
| 87102 |
| United States |
| Mount Sinai Hospital Joseph and Wolf Lebovic Health Complex | Toronto | Ontario | M5G 1X5 | Canada |
| CHU de Québec - Université Laval | Québec | G1V 4G2 | Canada |
| COMPLETED |
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| NOT COMPLETED |
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| ID | Title | Description |
|---|---|---|
| BG000 | Accuracy Testing | Comparison between GenePOC PCR and Reference Method Comparison between GenePOC PCR and Reference Method: Antepartum women swab specimen incubated in Lim Broth will be tested with the GenePOC GBS test on the GenePOC Instrument. The results will be compared to Reference Method defined as incubated Lim broth subcultured onto blood agar plate for observation of a Streptococcus agalactiae strain. |
| Units | Counts |
|---|---|
| Participants |
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| Title | Description | Population Description | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Denominator Units Selected | Denominators | Classes | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Age, Categorical | Count of Participants | Participants |
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| Sex: Female, Male | Count of Participants | Participants |
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| Race and Ethnicity Not Collected | Race and Ethnicity were not collected from any participant. | Count of Participants | Participants |
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| Region of Enrollment | Number | participants |
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| Type | Title | Description | Population Description | Reporting Status | Anticipated Posting Date | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Time Frame | Units Analyzed | Denominator Units Selected | Arm/Group Information | Denominators | Classes | Analyses | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Primary | Performance Characteristics | To establish the performance characteristics of the GenePOC GBS System for its use in determining the presence of GBS in vaginal/rectal swab, after Lim Broth enrichment, specimens from antepartum pregnant women. Sensitivity and specificity will be established in comparison to the Reference Method. Sensitivity performance results from the comparison of specimens being reported as positive by both method against the total number of specimen reported as positive on the Reference Method only. Sensitivity is reported as a percentage (i.e. concondant positives / concordant positive + discordant positive ([False Negative]). Specificity performance results from the comparison of specimens being reported as negative by both method against the total number of specimen reported as negative on the Reference Method only. Specificity is reported as a percentage (i.e. concondant negatives / concordant negatives + discordant negatives ([False Positive]). | Posted | Number | 95% Confidence Interval | percentage of specimens | At the time of the results with Reference Method is confirmed, up to 6 months |
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| Secondary | Positive and Negative Predictive Values | To estimate the Positive and Negative Predictive Values (PPV and NPV) of the GenePOC GBS System. PPV results from the comparison of specimens being reported as positive by both method against the total number of specimen reported as positive on the Investigational test only. PPV is reported as a percentage (i.e. concondant positives / concordant positive + discordant positive ([False Positive]). NPV results from the comparison of specimens being reported as negative by both method against the total number of specimen reported as negative on the Investigational test only. NPV is reported as a percentage (i.e. concondant negatives / concordant negatives + discordant negatives ([False Negative]). | Posted | Number | 95% Confidence Interval | percentage of specimens | At the time of the results with Reference Method is confirmed, up to 6 months |
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| Secondary | Unresolved Sample Results | To estimate the rate of unresolved results for the GenePOC GBS System due to Sample Processing control failure (unresolved sample results). | Posted | Number | 95% Confidence Interval | percentage of Unresolved | At the time of the results with Reference Method is confirmed, up to 6 months |
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| Secondary | Indeterminate Sample Results | To estimate the rate of indeterminate results for the GenePOC GBS Test due to an Instrument failure (indeterminate sample results). | Posted | Number | 95% Confidence Interval | percentage of Indeterminates | At the time of the results with Reference Method is confirmed, up to 6 months |
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From 26 August 2016 to 01 November 2016. Adverse event were assessed at the time of individual patient enrollment and participation, which lasts approximately 1-2 minutes at most.
Adverse event procedures were established at each site, but no adverse event was observed nor reported during the enrollment period.
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| ID | Title | Description | Deaths (Affected) | Deaths (At Risk) | Serious Events (Affected) | Serious Events (At Risk) | Other Events (Affected) | Other Events (At Risk) |
|---|---|---|---|---|---|---|---|---|
| EG000 | Accuracy Testing | Comparison between GenePOC PCR and Reference Method Comparison between GenePOC PCR and Reference Method: Antepartum women swab specimen incubated in Lim Broth will be tested with the GenePOC GBS test on the GenePOC Instrument. The results will be compared to Reference Method defined as incubated Lim broth subcultured onto blood agar plate for observation of a Streptococcus agalactiae strain. | 0 | 771 | 0 | 771 | 0 | 771 |
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| Title | Organization | Phone | Extension | |
|---|---|---|---|---|
| Dr Keith Chiasson, PhD | GenePOC | 418-650-3535 | 322 | keith.chiasson@genepoc.ca |
| Oct 16, 2018 |
| Prot_SAP_000.pdf |
| ID | Term |
|---|---|
| D013290 | Streptococcal Infections |
| ID | Term |
|---|---|
| D016908 | Gram-Positive Bacterial Infections |
| D001424 | Bacterial Infections |
| D001423 | Bacterial Infections and Mycoses |
| D007239 | Infections |
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| >=65 years |
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