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A Multiple Dose Study to Evaluate the Safety, Tolerability and Microbiome Dynamics of SER-287 in Subjects with Mild-to-Moderate Ulcerative Colitis.
This is a Phase 1b multicenter, randomized, double-blind, placebo-controlled multiple dose study designed to evaluate the safety and tolerability of SER-287, and to evaluate the microbiome alterations and pharmacodynamics associated with two dosing regimens of SER-287 in adult subjects with active mild-to-moderate ulcerative colitis (UC).
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Weekly SER-287, after Placebo Pre-Treat. | Experimental | Placebo pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks |
|
| Daily placebo, after Placebo Pre-Treat. | Placebo Comparator | Placebo pre-treatment, followed by once daily placebo for 8 weeks |
|
| Daily SER-287, after Vanco. Pre-Treat. | Experimental | Vancomycin pre-treatment, followed by once daily dosing of SER-287 for 8 weeks |
|
| Weekly SER-287, after Vanco. Pre-Treat. | Experimental | Vancomycin pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| SER-287 | Drug |
|
| Measure | Description | Time Frame |
|---|---|---|
| Safety and Tolerability of SER-287 | Treatment-Emergent Adverse Events Incidence by Treatment, System Organ Class and Preferred Term. The treatment period with SER-287 was eight weeks. All AEs were collected from the date of Informed Consent (up to 17 days of Screening) through Day 92 of the study. All SAEs were collected from the date of Informed Consent through Day 246 of the study. | Day 246 |
| Composition of the Intestinal Microbiome | Changes in the composition of the microbiome were characterized by whole metagenomic sequencing (WMS) of subjects' stool samples. Changes in the composition of the microbiome were measured by quantifying the number of unique types of spore-forming bacteria detected in subjects' stool samples after eight weeks of induction treatment versus baseline. | Baseline and 8 weeks |
| Engraftment of SER-287 Bacteria in All Treatment Arms | The stool microbiomes of SERES-101 subjects, before and after treatment with SER-287, were characterized using whole metagenomic sequencing (WMS). SER-287 drug product was also characterized using WMS. Microbiome engraftment was assessed by the number of spore-forming species in the drug product lots that were also detected in subjects' post-treatment fecal samples but not detected at baseline. | Baseline and 8 weeks |
| Measure | Description | Time Frame |
|---|---|---|
| Clinical Remission | Defined as a Total Modified Mayo Score <= 2 and an endoscopic subscore <= 1. The Total Modified Mayo Score is a measure of UC disease activity which ranges from 0 to 12 points and consists of four subscores (stool frequency, rectal bleeding, endoscopy, and physician global assessment), each graded from 0 to 3, with higher scores indicating more severe disease. The four components are summed together for a composite score, with a higher overall score indicating more severe disease (0 = no disease; 12 = worst disease). The Modified Mayo endoscopic subscore excludes friability from an endoscopic subscore of 1. |
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Inclusion Criteria:
Exclusion Criteria:
Fever > 38.3°C
Known or suspected toxic megacolon and/or known small bowel ileus
Known history of Crohn's disease
Subjects with serum albumin <2.5 g/dL at baseline
CMV polymerase chain reaction (PCR) positive from blood plasma at screening
Known stool studies positive for ova and/or parasites or stool culture within the 30 days before enrollment
Subjects on cyclosporine or triple immunosuppression, Triple immunosuppression will include any three of the following classes of drugs taken in combination: steroids (i.e., prednisone/budesonide/budesonide MMX), immunosuppressant (i.e., methotrexate/azathioprine/6-mercaptopurine), and/or other immunosuppressant (i.e., tacrolimus, cellcept).
Biologic medication (infliximab/ adalimumab/ golimumab/ certolizumab/vedolizumab/ustekinumab/natalizumab) use within 3 months prior to screening
Known active malignancy except for basal cell skin cancer, squamous cell skin cancer
Subjects with previous colectomy, ostomy, J-pouch, or previous intestinal surgery (excluding cholecystectomy, appendectomy)
Subjects with known history of celiac disease or gluten enteropathy
Subjects with Clostridium difficile positive stool at Screening Visit
Antibiotic use within the prior 1 month before randomization
Expected to receive antibiotics within 8 weeks of signing the Informed Consent Form (ICF) (i.e., for planned/anticipated procedure)
Received an investigational drug within 1 month before study entry
Received an investigational antibody or vaccine within 3 months before study entry
Previously enrolled in a SER-109/SER-287 study
Received an FMT within the last 6 months
Subjects with anatomic or medical contraindications to flexible sigmoidoscopy, including but not necessarily limited to toxic megacolon, gastrointestinal (GI) fistulas, immediate post-operative status from abdominal surgery, severe coagulopathy, large or symptomatic abdominal aortic aneurysm, or any subject where study physician deems subject at significant risk of complications of flexible sigmoidoscopy
Unable to stop steroid enemas or suppositories or mesalamine enemas or suppositories before screening visit
Unable to stop opiate treatment unless on a stable dose and no increase in dose planned for the duration of the study
Unable to stop probiotics before screening visit
Concurrent intensive induction chemotherapy, radiotherapy, or biologic treatment for active malignancy (subjects on maintenance chemotherapy may only be enrolled after consultation with medical monitor)
Known allergy or intolerance to oral vancomycin
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| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Community Clinical Research Network | Marlborough | Massachusetts | 01752 | United States |
| PubMed Identifier | Type | Citation | Retractions |
|---|---|---|---|
| 32763240 | Derived | Henn MR, O'Brien EJ, Diao L, Feagan BG, Sandborn WJ, Huttenhower C, Wortman JR, McGovern BH, Wang-Weigand S, Lichter DI, Chafee M, Ford CB, Bernardo P, Zhao P, Simmons S, Tomlinson AD, Cook DN, Pomerantz RJ, Misra BK, Aunins JG, Trucksis M. A Phase 1b Safety Study of SER-287, a Spore-Based Microbiome Therapeutic, for Active Mild to Moderate Ulcerative Colitis. Gastroenterology. 2021 Jan;160(1):115-127.e30. doi: 10.1053/j.gastro.2020.07.048. Epub 2020 Aug 4. |
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| ID | Title | Description |
|---|---|---|
| FG000 | Weekly SER-287, After Placebo Pre-Treat. | Placebo pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Placebo Pre-Treat |
| FG001 | Daily Placebo, After Placebo Pre-Treat. |
| Title | Milestones | Reasons Not Completed | |||||
|---|---|---|---|---|---|---|---|
| Overall Study |
|
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| Type | Includes Protocol | Includes SAP | Includes ICF | Document Label | Document Date | Document Uploaded Date | Document File Name |
|---|---|---|---|---|---|---|---|
| Prot | Yes | No | No | Study Protocol | Oct 10, 2016 | Aug 28, 2018 |
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| Placebo | Drug |
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| Placebo Pre-Treat | Drug |
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| Vancomycin Pre-Treat | Drug |
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| 8 weeks |
| Endoscopic Improvement | Defined as a decrease in endoscopic subscore >= 1 | 8 weeks |
Placebo pre-treatment, followed by once daily placebo for 8 weeks Placebo Placebo Pre-Treat |
| FG002 | Daily SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once daily dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat |
| FG003 | Weekly SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat |
| Completed | Subjects Completed Visit 12 Endoscopy (8-week treatment) |
|
| COMPLETED | Subjects Completed Visit 13 (short-term safety follow-up) |
|
| NOT COMPLETED |
|
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| ID | Title | Description |
|---|---|---|
| BG000 | Weekly SER-287, After Placebo Pre-Treat. | Placebo pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Placebo Pre-Treat |
| BG001 | Daily Placebo, After Placebo Pre-Treat. | Placebo pre-treatment, followed by once daily placebo for 8 weeks Placebo Placebo Pre-Treat |
| BG002 | Daily SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once daily dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat |
| BG003 | Weekly SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat |
| BG004 | Total | Total of all reporting groups |
| Units | Counts |
|---|---|
| Participants |
|
| Title | Description | Population Description | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Denominator Units Selected | Denominators | Classes | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Age, Continuous | Mean | Standard Deviation | years |
| |||||||||||||||
| Sex: Female, Male | Count of Participants | Participants |
| ||||||||||||||||
| Race/Ethnicity, Customized | Count of Participants | Participants |
| ||||||||||||||||
| Montreal Classification | Count of Participants | Participants |
| ||||||||||||||||
| Severity of UC | Count of Participants | Participants |
| ||||||||||||||||
| Receiving UC Treatment Prior to or On Date of First Pre-treatment Dose | Count of Participants | Participants |
| ||||||||||||||||
| Time Since First UC Diagnosis | Mean | Standard Deviation | months |
|
| Type | Title | Description | Population Description | Reporting Status | Anticipated Posting Date | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Time Frame | Units Analyzed | Denominator Units Selected | Arm/Group Information | Denominators | Classes | Analyses | |||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Primary | Safety and Tolerability of SER-287 | Treatment-Emergent Adverse Events Incidence by Treatment, System Organ Class and Preferred Term. The treatment period with SER-287 was eight weeks. All AEs were collected from the date of Informed Consent (up to 17 days of Screening) through Day 92 of the study. All SAEs were collected from the date of Informed Consent through Day 246 of the study. | Safety population | Posted | Count of Participants | Participants | Day 246 |
|
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| Primary | Composition of the Intestinal Microbiome | Changes in the composition of the microbiome were characterized by whole metagenomic sequencing (WMS) of subjects' stool samples. Changes in the composition of the microbiome were measured by quantifying the number of unique types of spore-forming bacteria detected in subjects' stool samples after eight weeks of induction treatment versus baseline. | Sensitivity Analysis Population - 1 (all randomized subjects with an evaluable stool sample collected at baseline and one evaluable stool sample collected at Visit 12 or Early Termination (ET) visit collected within a 2 week window surrounding Visit 12) | Posted | Mean | Standard Deviation | Richness of spore-forming species | Baseline and 8 weeks |
| ||||||||||||||||||||||||||||||||||||
| Primary | Engraftment of SER-287 Bacteria in All Treatment Arms | The stool microbiomes of SERES-101 subjects, before and after treatment with SER-287, were characterized using whole metagenomic sequencing (WMS). SER-287 drug product was also characterized using WMS. Microbiome engraftment was assessed by the number of spore-forming species in the drug product lots that were also detected in subjects' post-treatment fecal samples but not detected at baseline. | Sensitivity Analysis Population - 1 (all randomized subjects with an evaluable stool sample collected at baseline and one evaluable stool sample collected at Visit 12 or Early Termination (ET) visit collected within a two-week window surrounding Visit 12) | Posted | Mean | Standard Deviation | Richness SER-287 spore-forming species | Baseline and 8 weeks |
| ||||||||||||||||||||||||||||||||||||
| Secondary | Clinical Remission | Defined as a Total Modified Mayo Score <= 2 and an endoscopic subscore <= 1. The Total Modified Mayo Score is a measure of UC disease activity which ranges from 0 to 12 points and consists of four subscores (stool frequency, rectal bleeding, endoscopy, and physician global assessment), each graded from 0 to 3, with higher scores indicating more severe disease. The four components are summed together for a composite score, with a higher overall score indicating more severe disease (0 = no disease; 12 = worst disease). The Modified Mayo endoscopic subscore excludes friability from an endoscopic subscore of 1. | ITT, where the following were counted as missing: missing post-treatment endoscopy; adding UC medication for a flare during the treatment period; early termination prior to Day 48 | Posted | Count of Participants | Participants | 8 weeks |
| |||||||||||||||||||||||||||||||||||||
| Secondary | Endoscopic Improvement | Defined as a decrease in endoscopic subscore >= 1 | ITT, where the following were counted as missing: missing post-treatment endoscopy; adding UC medication for a flare during the treatment period; early termination prior to Day 48 | Posted | Count of Participants | Participants | 8 weeks |
|
Day 246
All AEs were collected from the date of Informed Consent (up to 17 days of Screening) through Day 92 of the study. All SAEs were collected from the date of Informed Consent through Day 246 of the study.
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| ID | Title | Description | Deaths (Affected) | Deaths (At Risk) | Serious Events (Affected) | Serious Events (At Risk) | Other Events (Affected) | Other Events (At Risk) |
|---|---|---|---|---|---|---|---|---|
| EG000 | Weekly SER-287, After Placebo Pre-Treat. | Placebo pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Placebo Pre-Treat | 0 | 15 | 0 | 15 | 8 | 15 |
| EG001 | Daily Placebo, After Placebo Pre-Treat. | Placebo pre-treatment, followed by once daily placebo for 8 weeks Placebo Placebo Pre-Treat | 0 | 11 | 0 | 11 | 2 | 11 |
| EG002 | Daily SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once daily dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat | 0 | 15 | 1 | 15 | 5 | 15 |
| EG003 | Weekly SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat | 0 | 17 | 0 | 17 | 9 | 17 |
| Term | Organ System | Source Vocabulary | Assessment Type | Notes | Statistical Information |
|---|---|---|---|---|---|
| Worsening depression | Psychiatric disorders | Systematic Assessment | The one case of worsening depression was reported as moderate severity, and probably not or likely not related to study drug, as determined by the investigator. |
|
| Term | Organ System | Source Vocabulary | Assessment Type | Notes | Statistical Information |
|---|---|---|---|---|---|
| Abdominal pain | Gastrointestinal disorders | Systematic Assessment | Treatment-emergent adverse event |
| |
| Constipation | Gastrointestinal disorders | Systematic Assessment | Treatment-emergent adverse event |
| |
| Diarrhea | Gastrointestinal disorders | Systematic Assessment | Treatment-emergent adverse event |
| |
| Flatulence | Gastrointestinal disorders | Systematic Assessment | Treatment-emergent adverse event |
| |
| Nausea | Gastrointestinal disorders | Systematic Assessment | Treatment-emergent adverse event |
| |
| Upper Respiratory Tract Infection | Infections and infestations | Systematic Assessment | Treatment-emergent adverse event |
| |
| Back pain | Musculoskeletal and connective tissue disorders | Systematic Assessment | Treatment-emergent adverse event |
| |
| Headache | Nervous system disorders | Systematic Assessment | Treatment-emergent adverse event |
|
Proposed publications must be submitted to Sponsor for review at least 30 days prior to publication. Sponsor can require removal of confidential information other than study data and Site/Investigator agree to consider Sponsor's suggestions with respect to the presentation of study data. Sponsor can force publication to be deferred for a period of up to 60 days in order to file any patents.
| Title | Organization | Phone | Extension | |
|---|---|---|---|---|
| Dr. Michele Trucksis, Chief Medical Officer | Seres Therapeutics | 617-945-9626 | mtrucksis@serestherapeutics.com |
| Prot_000.pdf |
| SAP | No | Yes | No | Statistical Analysis Plan: SERES-101 SAP | Aug 23, 2017 | Aug 28, 2018 | SAP_001.pdf |
| SAP | No | Yes | No | Statistical Analysis Plan: SERES-101 Microbiome SAP | Jul 17, 2017 | Mar 20, 2019 | SAP_002.pdf |
| ID | Term |
|---|---|
| D003093 | Colitis, Ulcerative |
| ID | Term |
|---|---|
| D003092 | Colitis |
| D005759 | Gastroenteritis |
| D005767 | Gastrointestinal Diseases |
| D004066 | Digestive System Diseases |
| D015212 | Inflammatory Bowel Diseases |
| D003108 | Colonic Diseases |
| D007410 | Intestinal Diseases |
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| Male |
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| Asian |
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| Black or African American |
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| Other - Indian |
|
| Left-sided UC (distal UC) |
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| Extensive UC (pancolitis) |
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| Moderate |
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| Yes |
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| GI-Abdominal distension |
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| GI-Abdominal pain |
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| GI-Abdominal pain upper |
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| GI-Abnormal faeces |
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| GI-Bowel movement irregularity |
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| GI-Colitis ulcerative (worsening) |
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| GI-Constipation |
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| GI-Diarrhoea |
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| GI-Diarrhoea haemorrhagic |
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| GI-Dyspepsia |
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| GI-Faecal incontinence |
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| GI-Flatulence |
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| GI-Frequent bowel movements |
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| GI-Gastrooesophageal reflux disease |
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| GI-Mucous stools |
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| GI-Nausea |
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| GI-Oesophagitis |
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| GI-Rectal discharge |
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| GI-Vomiting |
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| General disorders & administration site conditions |
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| Immune system disorders |
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| Infections and infestations |
|
| Injury, poisoning and procedural complications |
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| Investigations |
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| Metabolism and nutrition disorders |
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| Musculoskeletal and connective tissue disorders |
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| Nervous system disorders |
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| Psychiatric disorders |
|
| Reproductive system and breast disorders |
|
| Respiratory, thoracic and mediastinal disorders |
|
| Skin and subcutaneous tissue disorders |
|
| OG003 | Weekly SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat |
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Vancomycin pre-treatment, followed by once daily dosing of SER-287 for 8 weeks
Eubacterial Spores, Purified Suspension, Encapsulated
Vancomycin Pre-Treat
| OG003 | Weekly SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat |
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Vancomycin pre-treatment, followed by once daily dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat |
| OG003 | Weekly SER-287, After Vanco. Pre-Treat. | Vancomycin pre-treatment, followed by once weekly dosing of SER-287 for 8 weeks Eubacterial Spores, Purified Suspension, Encapsulated Vancomycin Pre-Treat |
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