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Antibiotic resistance is a major public health issue as multiresistant bacteria (MRB) are increasing. Among the actions to control resistance, one is an interesting lead: to prevent the emergence of resistant bacteria by limiting possibilities for bacteria to acquire resistance. Mechanisms of resistance genes acquisition are deeply studied but there are few data on the dynamic of acquisition over time. Among the genetic components that disseminate resistance genes, resistance integrons (RI) play a major role in the acquisition and dissemination of antibiotic resistance in gram-negative bacteria. The digestive tract of the newborn (NB), which is initially sterile, is colonized by a bacterial microbiota during the first days of life. It thus appears to be an appropriate model to study the dynamic of resistance acquisition. This project intends to follow the NB of neonatology over time in order to study the dynamic of the digestive acquisition of RI and MRB
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| Measure | Description | Time Frame |
|---|---|---|
| The occurrence over time of digestive acquisition of any type of RI | 3 weeks |
| Measure | Description | Time Frame |
|---|---|---|
| The occurrence over time of digestive acquisition of severals type of RI | "intI1" whenever the gene encoding a class 1 integrase will be detected "intI2" whenever the gene encoding a class 2 integrase will be detected "intI3" whenever the gene encoding a class 3 integrase will be detected An association: "intI1+intI2", "intI1+intI3", "intI2+intI3", "intI1+intI2+intI3" will also be searched. | 3 weeks |
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Inclusion Criteria:
with a predictable stay ≥ 3 weeks in the unit
Exclusion Criteria:
NB will not be included if:
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Mother-child pairs of all the NB, born in the center and hospitalized in the neonatology units of each center with a predictable stay ≥ 3 weeks in the unit
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| Name | Affiliation | Role |
|---|---|---|
| Antoine BEDU, MD | University Hospital, Limoges | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Hospital center | Bayonne | 64109 | France | |||
| University Hospital |
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The meconium or the first stool will be sampled at D0. The stool will then be sampled: at D7, at D21 and every 15 days until the day of discharge.
If the NB has no stool on the given day, a period of 3 more days will be accepted from the day the sampling was planned. After this period, "no sample" will be stated.
Meconiums and stool must be sampled in sterile jars, labelled and sent with the designation "DAIR3N protocol" to the bacteriology laboratory of each center. If the local laboratory cannot seed the samples 7 days a week, stool samples can be kept maximum 48h at +4°C before management.
In the mother
Vaginal sample will be taken during the delivery according to care practices of each center if:
it is a preterm vaginal delivery, early membrane rupture happens, there is a threat of very preterm delivery. About 55% of inclusions should be subject to this type of sampling. Sampling of mother's stool will be asked at the inclusion.
| Occurrence over time of digestive acquisition of MRB in NB hospitalized in neonatology units | Occurrence over time of digestive acquisition of MRB in NB hospitalized in neonatology units | 3 weeks |
| Bordeaux |
| 33076 |
| France |
| University hospital | Limoges | 87042 | France |
| Hospital center | Pau | 64000 | France |
| University Hospital | Toulouse | 31059 | France |