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Hypothesis: We hypothesize that RNAseq will allow us to learn more about the causative agents of necrotizing soft tissue infections (NSTI) and risk factors involved in acquiring these devastating infections
Tissue biopsies will be obtained from consented patients admitted with NSTI. Biopsies will be used for standard clinical analysis of bacterial species present or stored for later RNA sequencing. RNA sequencing will identify bacteria that are present within the infection site that may not be detected using standard culture techniques as well as reveal bacterial gene expression profiles within the NSTI site. Medical charts will also be reviewed for basic patient information as well as wound care management practices. We hope to identify bacterial species commonly present in these types of infections as well as risk factors predisposing individuals to NSTI's.
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| Measure | Description | Time Frame |
|---|---|---|
| Percentage of patients with non-culturable, anaerobic bacterial species colonization of NSTI | 2-6 wks (duration of hospitalization) |
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Inclusion Criteria:
Exclusion Criteria:
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Twenty to twenty five patients with necrotizing soft tissue infections (NSTI) admitted to the University Medical Center, Lubbock, TX
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| Name | Affiliation | Role |
|---|---|---|
| Kendra Rumbaugh, PhD | Texas Tech University Health Sciences Center | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Texas Tech University Health Sciences Center/University Medical Center | Lubbock | Texas | 79430 | United States | ||
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Tissue biopsies for RNAseq analysis of microbial gene expression
| University Medical Center |
| Lubbock |
| Texas |
| 79430 |
| United States |