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| Name | Class |
|---|---|
| Boston Children's Hospital | OTHER |
| Children's Hospital Medical Center, Cincinnati | OTHER |
| University of California, Los Angeles | OTHER |
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Researchers are working on ways to treat SCID patients who don't have a matched brother or sister. One of the goals is to avoid the problems that happen with stem cell transplant from parents and unrelated people, such as repeat transplants, incomplete cure of the immune system, exposure to chemotherapy, and graft versus host disease.
The idea behind gene transfer is to replace the broken gene by putting a piece of genetic material (DNA) that has the normal gene into the child's cells. Gene transfer can only be done if we know which gene is missing or broken in the patient. For SCID-X1, gene transfer has been done in the laboratory and in two previous clinical trials by inserting the normal gene into stem cells from bone marrow. The bone marrow is the "factory" inside the bones that creates blood and immune cells. So fixing the gene in the bone marrow stem cells should fix the immune problem, without giving chemotherapy and without risk of graft versus host disease, because the child's own cells are used, rather than another person's. Out of the 20 subjects enrolled in the two previous trials, 18 are alive with better immune systems after gene transfer. Two of the surviving subjects received gene corrected cells over 10 years ago.
Gene transfer is still research for two reasons. One is that not enough children have been studied to tell if the procedure is consistently successful. Of the 20 children enrolled in the previous two trials, one child did not have correction of the immune system, and died of complications after undergoing stem cell transplant. The second important reason why gene transfer is research is that we are still learning about the side effects of gene transfer and how to do gene transfer safely. In the last two trials, 5 children have experienced a serious side effect. These children developed leukemia related to the gene transfer itself. Leukemia is a cancer of the white blood cells, a condition where a few white blood cells grow out of control. Of these children, 4 of the 5 have received chemotherapy (medication to treat cancer) and are currently in remission (no leukemia can be found by sensitive testing), whereas one died of gene transfer-related leukemia.
Severe combined immunodeficiencies (SCID) are a heterogeneous group of inherited disorders characterized by a profound reduction or absence of T lymphocyte function. They arise from a variety of molecular defects which affect lymphocyte development and function. The most common form of SCID is an X-linked form (SCID-X1) which accounts for 40-50% of all cases. SCID-X1 is caused by defects in the common cytokine receptor chain, which was originally identified as a component of the high affinity interleukin-2 receptor (IL-2RG), but is now known to be an essential component of the IL-4, -7, -9 -15, and -21 cytokine receptor complexes. Classic SCID-X1 has an extremely poor prognosis without treatment. Death usually occurs in the first year of life from infectious complications unless definitive treatment can be administered. Until the recent advent of somatic gene therapy, hematopoietic stem cell transplantation (HSCT) offered the only curative option for patients with any form of SCID. If a genotypically matched sibling donor is available, HSCT is a highly successful procedure. However a genotypically matched family donor is only available for approximately 30% of patients. For the remaining individuals, alternative donor transplants, principally from matched unrelated or haploidentical parental donors have been performed. These approaches are still problematic with toxicity from ablative therapy, graft-versus-host disease and incomplete lymphoid reconstitution. Recent gene transfer trials have documented the efficacy of gene transfer in this disease, albeit with toxicity related to insertional mutagenesis. A new generation of self-inactivating (SIN) vectors has been developed which lack all enhancer-promoter elements of the LTR U3 region and are also devoid of all gammaretroviral coding regions. A SIN vector expressing the IL-2RG gene, pSRS11.EFS.IL2RG.pre* has been developed and has shown a reduction in mutagenic potential compared to LTR configuration in non-clinical studies. The current study is a phase I/II trial of somatic gene therapy for patients with SCID-X1.
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| Label | Type | Description | Intervention Names |
|---|---|---|---|
| Gene Transfer | Experimental | open label single arm study |
|
| Name | Type | Description | Arm Group Labels | Other Names |
|---|---|---|---|---|
| Gene transfer | Biological | Three procedures: 1) Bone marrow harvest from the patient's posterior iliac crests. 2.) Chemotherapy conditioning with Busulfan 3)One time infusion of patient's transduced bone marrow cells. |
| Measure | Description | Time Frame |
|---|---|---|
| CD3 Cell Count Post Infusion | Immunological reconstitution defined as absolute CD3 cells of >300/μl and PHA stimulation index >15 at 6 months post infusion | 6 Months Post Gene Transfer |
| Incidence of Life Threatening Adverse Reactions Related to the Gene Therapy Procedure | Follow up time for each of the 8 enrolled patients is as follows: Patient #1 -12 yrs, Patient#2 -11 yrs, Patient #6- 9 yrs, Patient #7- 8 yrs, Patient #8 - 4.5 yrs. Patient #3 & #5 failed primary endpoint and had allo transplant, Patient #4 retreated with Gene therapy and is 6 years post 2nd infusion. | 4.5-12 years post infusion of the gene therapy product |
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Inclusion Criteria:
Diagnosis of SCID-X1 based on immunophenotype (<200 CD3+ autologous T cells, and confirmed by DNA sequencing)
AND
Lack an HLA identical (A, B, C, DR, DQ) related donor
AND either one of the following:
1. Patients in good clinical condition who do not have a readily available HLA identical (A,B,C,DR,DQ) unrelated donor (readily available defined as: a donor confirmed within 6 weeks of searching, with ability to transplant within 3 months of diagnosis).
2. Patients with an active, therapy-resistant infection or other medical conditions that significantly increase the risk of allogeneic transplant. Examples of "therapy-resistant infections that significantly increase the risk of allogeneic transplant" include but are not limited to:
Exclusion Criteria:
Although the presentation of the disease may be variable in type, the severity of the immunodeficiency is uniform. The gene transfer protocol will be instituted in the place of haploidentical transplant for those patients who do not have a matched family donor or in whom an unrelated donor transplant is not indicated for the reasons specified above. Apart from the gene transfer protocol, the patients will not undergo additional procedures that would not form part of an equivalent haploidentical transplantation regimen, and will not receive conditioning chemotherapy.
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| Name | Affiliation | Role |
|---|---|---|
| Jennifer Whangbo, MD | Boston Children's Hospital | Principal Investigator |
| Facility | Status | City | State | ZIP | Country | Contacts |
|---|---|---|---|---|---|---|
| Mattel Children's Hospital - UCLA | Los Angeles | California | 90095 | United States | ||
| Children's Hospital Boston |
| PubMed Identifier | Type | Citation | Retractions |
|---|---|---|---|
| 30261899 | Derived | Clarke EL, Connell AJ, Six E, Kadry NA, Abbas AA, Hwang Y, Everett JK, Hofstaedter CE, Marsh R, Armant M, Kelsen J, Notarangelo LD, Collman RG, Hacein-Bey-Abina S, Kohn DB, Cavazzana M, Fischer A, Williams DA, Pai SY, Bushman FD. T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency. Genome Med. 2018 Sep 28;10(1):70. doi: 10.1186/s13073-018-0580-z. | |
| 25295500 |
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| ID | Title | Description |
|---|---|---|
| FG000 | Gene Transfer | open label single arm study Gene transfer: Three procedures: 1) Bone marrow harvest from the patient's posterior iliac crests. 2) Chemotherapy conditioning with Busulfan (**patient 08 only) 3) One time infusion of patient's transduced bone marrow cells. |
| Title | Milestones | Reasons Not Completed | |||||
|---|---|---|---|---|---|---|---|
| Overall Study |
|
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| Type | Includes Protocol | Includes SAP | Includes ICF | Document Label | Document Date | Document Uploaded Date | Document File Name |
|---|---|---|---|---|---|---|---|
| Prot_SAP | Yes | Yes | No | Study Protocol and Statistical Analysis Plan | Jan 4, 2022 |
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| Boston |
| Massachusetts |
| 02116 |
| United States |
| Cincinnati Children's Medical Center | Cincinnati | Ohio | 45229 | United States |
| Derived |
| Hacein-Bey-Abina S, Pai SY, Gaspar HB, Armant M, Berry CC, Blanche S, Bleesing J, Blondeau J, de Boer H, Buckland KF, Caccavelli L, Cros G, De Oliveira S, Fernandez KS, Guo D, Harris CE, Hopkins G, Lehmann LE, Lim A, London WB, van der Loo JC, Malani N, Male F, Malik P, Marinovic MA, McNicol AM, Moshous D, Neven B, Oleastro M, Picard C, Ritz J, Rivat C, Schambach A, Shaw KL, Sherman EA, Silberstein LE, Six E, Touzot F, Tsytsykova A, Xu-Bayford J, Baum C, Bushman FD, Fischer A, Kohn DB, Filipovich AH, Notarangelo LD, Cavazzana M, Williams DA, Thrasher AJ. A modified gamma-retrovirus vector for X-linked severe combined immunodeficiency. N Engl J Med. 2014 Oct 9;371(15):1407-17. doi: 10.1056/NEJMoa1404588. |
| COMPLETED |
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| NOT COMPLETED |
|
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| ID | Title | Description |
|---|---|---|
| BG000 | Gene Transfer | open label single arm study Gene transfer: Three procedures: 1) Bone marrow harvest from the patient's posterior iliac crests. 2.) Chemotherapy conditioning with Busulfan (**only patient 08) 3)One time infusion of patient's transduced bone marrow cells. |
| Units | Counts |
|---|---|
| Participants |
|
| Title | Description | Population Description | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Denominator Units Selected | Denominators | Classes | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Age, Categorical | Count of Participants | Participants |
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| Sex: Female, Male | Count of Participants | Participants |
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| Ethnicity (NIH/OMB) | Count of Participants | Participants |
| ||||||||||||||||||||
| Race (NIH/OMB) | Count of Participants | Participants |
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| Region of Enrollment | Number | participants |
|
| Type | Title | Description | Population Description | Reporting Status | Anticipated Posting Date | Parameter Type | Dispersion Type | Unit of Measure | Calculate Percentage | Time Frame | Units Analyzed | Denominator Units Selected | Arm/Group Information | Denominators | Classes | Analyses | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Primary | CD3 Cell Count Post Infusion | Immunological reconstitution defined as absolute CD3 cells of >300/μl and PHA stimulation index >15 at 6 months post infusion | 8 subjects were treated with an infusion of gene modified cells. 5 of 8 had absolute CD3 counts (cells/uL) greater than 300 and a PHA stimulation index greater than 15 at 6 months post infusion and met the primary endpoint. 1 subject who did not reconstitute T cells was taken off study. 2 subjects received a second infusion of gene modified cells; of these 1 had improved CD3 counts and the other did not and came off study. | Posted | Count of Participants | Participants | No | 6 Months Post Gene Transfer |
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| |||||||||||||||||||||||||||
| Primary | Incidence of Life Threatening Adverse Reactions Related to the Gene Therapy Procedure | Follow up time for each of the 8 enrolled patients is as follows: Patient #1 -12 yrs, Patient#2 -11 yrs, Patient #6- 9 yrs, Patient #7- 8 yrs, Patient #8 - 4.5 yrs. Patient #3 & #5 failed primary endpoint and had allo transplant, Patient #4 retreated with Gene therapy and is 6 years post 2nd infusion. | Patient #3 & #5 failed primary endpoint and had allo transplant and withdrawn from study | Posted | Count of Participants | Participants | 4.5-12 years post infusion of the gene therapy product |
|
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Adverse event data were collected from the time an enrolled participant underwent the bone marrow harvest through five years post gene therapy infusion.
Common adverse event and serious adverse event definitions were used for this study. SAEs that were considered life threatening or required hospitalization or prolongation of a hospitalization are listed below. No SAEs that resulted in death, resulted in a persistent or significant disability/incapacity, was a new malignancy, or led to a congenital anomaly or birth defect occurred. No AEs or SAEs were deemed related to the gene therapy product.
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| ID | Title | Description | Deaths (Affected) | Deaths (At Risk) | Serious Events (Affected) | Serious Events (At Risk) | Other Events (Affected) | Other Events (At Risk) |
|---|---|---|---|---|---|---|---|---|
| EG000 | Gene Transfer | open label single arm study Gene transfer: Three procedures: 1) Bone marrow harvest from the patient's posterior iliac crests. 2.) Chemotherapy conditioning with Busulfan (**only patient 08) 3)One time infusion of patient's transduced bone marrow cells. | 0 | 8 | 3 | 8 | 0 | 8 |
| Term | Organ System | Source Vocabulary | Assessment Type | Notes | Statistical Information |
|---|---|---|---|---|---|
| Varicella infection | Infections and infestations | CTCAE (3.0) | Systematic Assessment | Grade 3, recovered with medication |
|
| Upper respiratory infection | Infections and infestations | CTCAE (3.0) | Systematic Assessment |
| |
| E. Coli and Klebsiella Infection | Infections and infestations | CTCAE (3.0) | Systematic Assessment | Treated with antibiotics |
|
| Rhinovirus | Immune system disorders | CTCAE (3.0) | Systematic Assessment | Admitted for fever, rhinovirus positive |
|
| Pseudomonas/Stenotrophomonas Infection | Infections and infestations | CTCAE (3.0) | Systematic Assessment | Admitted for fever with a central line, positive cultures, treated with antibiotics |
|
| BCGosis | Infections and infestations | CTCAE (3.0) | Systematic Assessment | Treated with medication and resolved. |
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| Title | Organization | Phone | Extension | |
|---|---|---|---|---|
| David Williams, MD | Boston Children's Hospital | 617-919-2697 | David.Williams2@childrens.harvard.edu |
| Mar 30, 2026 |
| Prot_SAP_000.pdf |
| ID | Term |
|---|---|
| D016511 | Severe Combined Immunodeficiency |
| D053632 | X-Linked Combined Immunodeficiency Diseases |
| ID | Term |
|---|---|
| D000081207 | Primary Immunodeficiency Diseases |
| D030342 | Genetic Diseases, Inborn |
| D009358 | Congenital, Hereditary, and Neonatal Diseases and Abnormalities |
| D007232 | Infant, Newborn, Diseases |
| D049914 | DNA Repair-Deficiency Disorders |
| D008659 | Metabolic Diseases |
| D009750 | Nutritional and Metabolic Diseases |
| D007153 | Immunologic Deficiency Syndromes |
| D007154 | Immune System Diseases |
| D040181 | Genetic Diseases, X-Linked |
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| ID | Term |
|---|---|
| D005818 | Genetic Engineering |
| ID | Term |
|---|---|
| D005821 | Genetic Techniques |
| D008919 | Investigative Techniques |
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| Unknown or Not Reported |
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| Native Hawaiian or Other Pacific Islander |
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| Black or African American |
|
| White |
|
| More than one race |
|
| Unknown or Not Reported |
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